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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagatataagtttttttgctattagtaacacattaacaatattatcaatactgacaatacattatatgccactatatttttattttatcttatgctcatctttttcctatcatatgttgaattcaatatttaagttatataagtggtaaacctacttcatcaatttacatttag

Basic information

species Glycine max
transcript GLYMA02G40520.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40520.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g08450.t01 (Vitis vinifera), 5'ss of exon 5
ATTTCTATTGGTTATTTTCTAACAGATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagatataagtttttttgctattagtaacacattaacaatattatcaatactgacaatacattatatgccactatatttttattttatcttatgctcatctttttcctatcatatgttgaattcaatatttaagttatataagtggtaaacctacttcatcaatttacatttag
|| || ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| ||||| || |||||||||| | |  ||  |   ||||    || | | ||  |    |||||   |||||     | ||||| |  |  |  |  ||| |   || |  ||   |   |                                                                        
ATCTCCATTGGTTATTTTCTGTCAGACTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGCGGTCTGGAGTATgtaagtacaaa-gagaatgcatgctcaatgttagatatcca----attatt--tactgttgg-agattatttttccttcaaagtttgtgacatatcctgaataaagtc-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151395391|gb|EV265262.1|EV265262
EST:     ATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATAT                         GTTCTGCACCACGGCCTATCCATAGGTTCTATTACACTATGTCTGCTAAGT
genomic: ATTTGGCAATGATTCTTTGGAATTTTCCAGCTTTAGGGGGTCTTGAATATgtaagtagat ... ttacatttagGTTCTACACCACGGCCTATCCATAGGTTCTATTACACTATGTCTGCTAAGT