1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTTCTGAGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcatatttatgctttatcctatttgctatctcttgatcttgagagtttgagtttttcatgtagctagtttttttttggaagcaatttgacccctgatgtttttgattgtag
species | Glycine max |
transcript | GLYMA02G40310.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AGGGGGTTGAGACTGCATTTGCTGGTTTG-AAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATTAAGATTTGEST: gi|151412916|gb|EV282728.1|EV282728
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|208281966|gb|GE080176.1|GE080176
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|208244387|gb|GE042572.1|GE042572
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: CTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|38193867|gb|CF923073.1|CF923073
genomic: CTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: AAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|58022083|gb|CX708824.1|CX708824
genomic: AAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: TGAGACTGCATTTGCTGG-TTGAAAAAAGAAGAAGAAGAAGCCT G-TGAAAATGAGTAAC-TGAAATGATGAGAGTGGAGATGCAAATGAGGATTEST: gi|208057088|gb|GD854179.1|GD854179
genomic: TGAGACTGCATTTGCTGGTTTG-AAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTG-AAATGAGTAACTTG-AATGATGAGAGTGGAGATGCAAATGAAGATT
EST: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|208314970|gb|GE112262.1|GE112262
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: CTGCATTTGCTTGGTTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|58020605|gb|CX707347.1|CX707347
genomic: CTGCATTTGC-TGG-TTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: AGGGGGTTGAGACTGCATTTGCTGG-TTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|254337820|gb|GR849559.1|GR849559
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: GAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTGEST: gi|16347705|gb|BI973300.1|BI973300
genomic: GAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
EST: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCT GTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
genomic: AGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcata ... ttgattgtagGTTGAAATGAGTAACTTGAATGATGAGAGTGGAGATGCAAATGAAGATTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTGAGGGGGTTGAGACTGCATTTGCTGGTTTGAAAAAGAAGAAGAAGAAGCCTgtaagtcatatttatgctttatcctatttgctatctcttgatcttgagagtttgagtttttcatgtagctagtttttttttggaagcaatttgacccctgatgtttttgattgtag
- - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - AGAAGC