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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGgtatggctctattaatttaatctttatctcaatccttttgtgtacatgtttacgcagttcttttaaattacttattatcagagaaaaatatcatcaccctgtaattgcagcacatttaatctgacaattttttaccggaatttcaggcttactttcctcctatttcacag

Basic information

species Glycine max
transcript GLYMA02G40280.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G40280.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G158162_T03 (Zea mays), 5'ss of exon 5
TTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGgtatggctctattaatttaatctttatctcaatccttttgtgtacatgtttacgca-gttcttttaaattacttattatcagagaaaaatatcatcaccctgtaattgcagcacatttaatctgacaattttttaccggaatttcaggcttactttcctcctatttcacag
||  || || || || || |||||||||||||||||  ||||||| || |||||||| || || || || |||||||| |||||| |||| || ||||||          | |||||  | | | |   | | |||   ||    ||||  || ||| ||||  |||   ||||  |           |  ||  ||   | ||                                                                
TTCAAATTCCACAATCGTTCCATTGTTCGAGAAGGTCCTGAGTGCGAGTGATGCAGGCCGCATAGGGCGCCTTGTTCTTCCAAAAGCTTGTGCCGAGgta----------actttaacatctgtttggcttccttttcata---atttaaacatgtttttttttattgtatattgccgattgcctgatttgtcttccaaaagttatttgg----------------------------------------------------------

upper sequence: GLYMA02G40280.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g08100.t01 (Vitis vinifera), 5'ss of exon 5
TTTGAAGTCTACTATAGTGCCATTGTTCGAGAAGGTATTGAGTGCCAGCGATGCAGGTCGAATTGGTCGACTTGTTCTCCCAAAATCTTGCGCTGAGgtatggctctattaatttaatctttatctcaatccttttgtgtacatgtttacgcagttcttttaaattacttattatcagagaaaaatatcatcaccctgtaattgcagcacatttaatctgacaattttttaccggaatttcaggcttactttcctcctatttcacag
|||||| || || || |||||||| |||||||||||  ||||||| || ||||| ||||||||||||||  | || ||||||||| | || ||||| ||| |  |  |  ||  || || |   |||||| | ||||| | | ||| | |     |   ||   ||| ||||| |  | | |   | |  |  |  |  |  || |  |  | |||    | |                                            
TTTGAATTCCACCATTGTGCCATTATTCGAGAAGGTTCTGAGTGCTAGTGATGCTGGTCGAATTGGTCGTTTGGTCCTCCCAAAAGCATGTGCTGAAgtaagttttca--aaagtagtcatc--ctcaatacctttgt-ttcttgtatgc-----tagcttgtgttatttatttt--gtggaggtttttcttccttttcatatgtataaactgtaagtcaatacag-----------------------------------------