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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAACAGAGAAGATTTACAAGAATCTAGACAGCATGACAAGACTCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgattttttgacttggaagacaacaacacattattattataatatggttcaaaacaatgactttttctttatgatgtgaactccattttttag

Basic information

species Glycine max
transcript GLYMA02G39230.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014509|gb|CX701251.1|CX701251
EST:     TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCNTACAGCAAT
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
EST: gi|151393687|gb|EV263562.1|EV263562
EST:     TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
EST: gi|151407473|gb|EV277288.1|EV277288
EST:     TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
EST: gi|192305128|gb|FG994678.1|FG994678
EST:     TCATTAGATTCACTGCGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAA
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAA
EST: gi|46492770|gb|CN472326.1|CN472326
EST:     TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
EST: gi|151394272|gb|EV264143.1|EV264143
EST:     TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTG                         TTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT
genomic: TCATTAGATTCACTGTGCCATTTCCATTGTTTGTGTATCCAATTTATTTGgtgagtgatt ... cattttttagTTTTCAAGAAGCCCCGGAAAGGAAGGCTCTCACTTCAATCCCTACAGCAAT