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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTAAGCCCAAGAAAGTTAAAGTGATCCCTCCTTTCAGGCGCTTGCTTTCAAAGCGGCCAACATGGTCTCTAATCATTGCAAATTCCATGCACAGTTGGgtaaggcctcagactccagcatttgtttgatttatgttgctggtgttcttaattggagctgataattgtcatatttgatagcaaattgtcatttattttg...

Basic information

species Glycine max
transcript GLYMA02G38930.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G38930.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g06040.t01 (Vitis vinifera), 5'ss of exon 3
-AGCTAAGCCCAAGAAAGTTAAAGTGATCCCTCCTTTCAGGCGCTTGCTTTCAAAGCGGCCAACATGGTCTCTAATCATTGCAAATTCCATGCACAGTTGGgtaaggcctcagactccagcatttgtttgatttatgttgctggtgttcttaattggagctgataattgtcata-tttgatagcaaattgtcatttattttg
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GAATCAAGCT-AAGAGGACCAAAGTGATCCCTCCTTTCAGACGCTTGCTTTCTAAACCACCAACATGGTCCCTAATTGTTGCAAATGCCATGCACAGCTGGgtattgcatacttatctccctctagtttattctagaattgcgttaatagtaatctgaattaataaatacgacagtttgaatgctccat-tcctttagcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15814220|gb|BI786495.1|BI786495
EST:     CAAAGCGGCCAACATGGTCTCTAATCATTGCAAATTCCATGCACAGTTGG                         GGNNNNNNNACTGTTCTTTCTTGGATGCCCATATACTTCAGCTCA
genomic: CAAAGCGGCCAACATGGTCTCTAATCATTGCAAATTCCATGCACAGTTGGgtaaggcctc ... tatttcacagGGTTTTTTTACTGTTCTTTCTTGGATGCCCATATACTTCAGCTCA