Sequence
atgc intronic sequence ATGC exonic sequenceGGGGGAGCCATTGTTGAAGAAGGCTTATGGCGAAGAAGGCGGTGATGACATTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGGgtaagaatttacttgtttgttgttgttgattacttgatttcatttatctacatgtttatggcacaagaaaaaatttataaaagaggtcgcttggtgtact...
Basic information
species | Glycine max |
transcript | GLYMA02G35010.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G35010.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G11760.1 (Arabidopsis thaliana), 5'ss of exon 3
GGGGGAGCCATTGTTGAAGAAGGCTTATGGCGAAGAAGGCGGTGATGACATTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCC---TTTCACTTGGGgtaagaatttacttgtt-tgttgttgttga--ttacttgatttcatttatctacatgtttatggcacaagaaaaaatttataaaagaggtcgcttggtgtact
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---AGAGCCTTTGTTAAAGAAGGATAATGGAGAAGAAGGTGGAGATGACATTGATTTTGATCGGAGGCAACTTAGCTCAGATGAAGCTCATCCTCCATTTGGGgtaaggtcttataagtagcatcattattcagtttagttagttacagtttttctca-gtttttga------atgtgttttatatgcag----------------
upper sequence: GLYMA02G35010.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0032g01040.t01 (Vitis vinifera), 5'ss of exon 3
GGGGGAGCCATTGTTGAAGAAGGCTTATGGCGAAGAAGGCGGTGATGACATTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGGgtaagaatttacttgtttgttgttgttgattacttgatttcatttatctacatgtttatggcacaagaaaaaattta----taaaagaggtcgcttggtgtact--
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AGGGGAGCCCCTGTTAAAGAAAGCCTACGGAGAAGATGGTGGGGATGACATTGATTTTGATCGTCGGCAGCTCAGCTCTGATGAATCTCTTCCATTTGGGgtaagaaccta-ttctttcctgctttcttttctgtagttctg-----ccatgttgttatgtcacattaattgattttcctttatcaatgtttttgaagtgaattcc
upper sequence: GLYMA02G35010.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S150_17V6.1 (Physcomitrella patens), 5'ss of exon 3
------------------GGGGGAGCCATTGTTGAAGAAGGCTTATGGCGAAGAAGGCGGTGATGACATTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGGgtaagaatttacttgtttgttgttgttgattacttgatttcatttatctacatgtttatggcacaagaaaaaatttataaaagaggtcgcttggtgtact
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CAGGTCACCTCGATCTCGCGGGGAGCCATTGCTGAACAAAGCTTATGGGGAGGAAGGTGGTGATGAAATTGACTGGCATCGACGGCAGGC-AGATCCAACAgtcagctccta----------------acttatctcctgttttttcttttttcttttctagagcctgtgtgacattgaacttcggaaagttctgttgttggacatgttcaaagtga-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7589841|gb|AW705607.1|AW705607EST: TTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGG AAGACTGAGGATGATTCAGCTGCAAATCGATCATCAGTGTCTGAATTTGGG
genomic: TTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGGgtaagaattt ... tgtcttgcagAAGACTGAGGATGATTCAGCTGCAAATCGATCATCAGTGTCTGAATTTGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGGGGAGCCATTGTTGAAGAAGGCTTATGGCGAAGAAGGCGGTGATGACATTGATTATGATCGCAGACAGCTTAGCTCTGATGAATCCCTTTCACTTGGGgtaagaatttacttgtttgttgttgttgattacttgatttcatttatctacatgtttatggcacaagaaaaaatttataaaagaggtcgcttggtgtact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaaaa