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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgtagatacaacttgtttgattcagttagaagtttcaagaaattagtaaggaaaatgtgtcttgaagagttattcagtggaatctgttaagaatgaaaagg...

Basic information

species Glycine max
transcript GLYMA02G34060.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G06820.1 (Arabidopsis thaliana), 5'ss of exon 4
CCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgtagatacaacttgtttgattcagttagaagtttcaagaaattagtaaggaaaatgtgtcttgaagagttat--tcagtggaatctgttaagaatgaaaagg-
| ||||| ||||| || |||||||| || |||||||||||||||||  | ||||| || || ||||||||||| |||||||||||    | ||    ||  |||   |   || || ||  |  ||  | |   |||| | | |  |  |  ||   |   |   | |  | |    ||       
CTTATTACTTGCCCCAAAATGCTGGGGCTATAGCTCGGAAGTACATAAAGGATCCTCAATTATTGTCTTTCATTGATGCAGAGgtgagaaaaaaacatt--attttttcttaacttgcacaatttttttcactcaaatttatatccagaatatagcatggatatcacccttcatatttgcctgcag

upper sequence: GLYMA02G34060.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0032g00800.t01 (Vitis vinifera), 5'ss of exon 4
CCTATTATTTGCCTCAGAATGCTGGAGCCATAGCTCGGAAGTACATTCAAGATCCACAGTTGTTGTCTTTCATAGATGCAGAGgt-------agatacaacttgtttgat--tcagttagaagtttcaagaaattagtaaggaaaatgtgtcttgaagagtta--ttcagtggaatc--tgttaagaatgaaaagg------
||||||||||||| || |||||||||| |||||| || ||||||||  | ||||| ||| |||| |||||||||||||| |||||       || ||   | |  |||||  | ||||     | |  | |  || | ||     || || | |       ||  ||||   | |||  ||||||  |||  | |       
CCTATTATTTGCCCCAAAATGCTGGAGACATAGCCCGCAAGTACATAAAGGATCCCCAGCTGTTATCTTTCATAGATGCTGAGgtttgccgcagttatttcatagttgatgttgagtttttcttattgatagctttggaaccttcatatggcatatcccactactttcatgagcatcaatgttaactatggtatgtctgcag