1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctttactctcttttcctaggatacctgagattatttgtaggatatttcacatgctttacttttactgttaatccttgtcaaactggtcaatttctctccctctctctagtgtcggcttgttgttgcatcatctaatatatggtttaatttttag
species | Glycine max |
transcript | GLYMA02G33770.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCEST: gi|151408544|gb|EV278352.1|EV278352
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgccttt ... taatttttagGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGC
EST: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAA GTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGCEST: gi|57575424|gb|CX548399.1|CX548399
genomic: AATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgccttt ... taatttttagGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGC
EST: ATCATGACAATGGGAGAACACAAATAA-TGNATCTGTTCAATCAGGACAA GTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGC
genomic: ATCATGACAATGGGAGAACACAAATAATTG-ATCTGTTCAATCAGGACAAgtatgccttt ... taatttttagGTATTTAAATGCTATCCAAACTAGTGCTCCACACCTTTTACGATACTTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGTGCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAATCATGACAATGGGAGAACACAAATAATTGATCTGTTCAATCAGGACAAgtatgcctttactctcttttcctaggatacctgagattatttgtaggatatttcacatgctttacttttactgttaatccttgtcaaactggtcaatttctctccctctctctagtgtcggcttgttgttgcatcatctaatatatggtttaatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA