Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCCACAGCTTGAAATATCAAAAGCTTCTATATTTGGTCATTCTATGGGTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgattacacaactgaaaatctggttttaatatagtcaaagaattactttggaaactttggcaatttcctaagcattatggatggttttactgttga...

Basic information

species Glycine max
transcript GLYMA02G33350.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G33350.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g09010.t01 (Vitis vinifera), 5'ss of exon 4
TTTTCCACAGCTTGAAATATCAAAAGCTTCTATATTTGGTCATTCTATGGGTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgattacacaactgaaaatctggttttaatatagtcaaagaatta--ctttggaaactttggcaatttcct-aagcattatggatggttttactgttga----
|||| | |||||||| | ||||| ||| ||||||| ||||||||||||||| |||||||| ||||| ||||||| ||||||||||| ||| || |||||||||     ||  || |   | || |  | |    ||  ||||||   ||   ||||  ||  |||   |   ||| || | | ||  |    |  ||| || |    
TTTTGCTCAGCTTGATACATCAAGAGCATCTATATCTGGTCATTCTATGGGCGGGCATGGAGCTCTGACAATCTACCTGAAAAATCTGGACAAGTATAAGgtgcc---taagcatc---atatttcctctctgcatt-tcaaagttctaaattttgataaaattgtagaaggcctgaaacttaatcaacttctgaacttttaatatt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192296776|gb|FG993074.1|FG993074
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|7924639|gb|AW830665.1|AW830665
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|15000383|gb|BI321197.1|BI321197
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|193448655|gb|FK413380.1|FK413380
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCTTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|13251945|gb|BG362848.1|BG362848
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATA
EST: gi|193509151|gb|FK465635.1|FK465635
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|193334757|gb|FK300577.1|FK300577
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|9899509|gb|BE608477.1|BE608477
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCACATCCTATTAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|208139460|gb|GD933928.1|GD933928
EST:     ACAATCTTCCTGTAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: ACAATCTTCCTG-AAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|208205554|gb|GE006553.1|GE006553
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTAGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|193410829|gb|FK376368.1|FK376368
EST:     TGGGCATGGTGCTCTAACAATCTTCCTAGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: TGGGCATGGTGCTCTAACAATCTTCCT-GAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|193719814|gb|FK655742.1|FK655742
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|16347920|gb|BI973515.1|BI973515
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTT
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTT
EST: gi|151402748|gb|EV272561.1|EV272561
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|151409952|gb|EV279760.1|EV279760
EST:     TGGGCATGGTGCTCTAACAATCTTCCTGAAAAAATCAGGATAAATATAAG                         TCAGTTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGG
genomic: TGGGCATGGTGCTCTAACAATCTTCCTGAAAAA-TCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTT-CTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGG
EST: gi|193400452|gb|FK366693.1|FK366693
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|58017950|gb|CX704692.1|CX704692
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|7234496|gb|AW569833.1|AW569833
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|208300516|gb|GE099735.1|GE099735
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|151409483|gb|EV279291.1|EV279291
EST:     GTGGGCATGGTGCTCTAACAATCCTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|15202064|gb|BI425203.1|BI425203
EST:     GATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|12774209|gb|BG239136.1|BG239136
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATTAATATAAG                         TCAGTTTCTGGCTTTGCTCCA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCA
EST: gi|208081956|gb|GD881264.1|GD881264
EST:     GAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|57575937|gb|CX548908.1|CX548908
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|298198180|gb|HO039719.1|HO039719
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCC
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCC
EST: gi|151396504|gb|EV266381.1|EV266381
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|58020784|gb|CX707526.1|CX707526
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|192314973|gb|FK010791.1|FK010791
EST:     CAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: CAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|10255594|gb|BE823360.1|BE823360
EST:     GTGGGCATGGTGCTCTANCAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|151404093|gb|EV273903.1|EV273903
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|208333592|gb|GE131985.1|GE131985
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|298166560|gb|HO009999.1|HO009999
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAAT
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAAT
EST: gi|13789108|gb|BG651699.1|BG651699
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|192298137|gb|FG991417.1|FG991417
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|192296777|gb|FG993075.1|FG993075
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|58021316|gb|CX708057.1|CX708057
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|15286136|gb|BI470027.1|BI470027
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
EST: gi|58017299|gb|CX704041.1|CX704041
EST:     GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAG                         TCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA
genomic: GTGGGCATGGTGCTCTAACAATCTTCCTGAAAAATCAGGATAAATATAAGgtgttgatta ... cttgttccagTCAGTTTCTGCCTTTGCTCCAATAGCAAATCCTATAAATTGTCCTTGGGGA