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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttactatggtgtgtctgatggtattaagtgtagcagttctttgtactgtttttgctttgttgcttggcatcttgttttttc...

Basic information

species Glycine max
transcript GLYMA02G32780.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g41580.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttactatggtgtgtctgatggtattaag-tgtagcagttctttgtactgtttttgctt-tgttgct-tggcatcttgttttttc-
|| |   |||||||| || || ||||||||||||||||||||||| || |||||||| |||||||| ||||| || || ||||| ||  ||||||||||||| |    | |||| |  ||| |  |  | | | |  |  ||||    | |  |  |  | ||| | ||||  || | | |||   ||  | || |    | | 
GTATCAAGAGGTTGTTGCGGTGACTGGTGATGGAACCAATGATGCCCCAGCACTGCACGAGTCAGATATTGGACTAGCAATGGGTATCACTGGAACTGAGgtat----ctatgaatgtttttcggtaatttatgttgttttattcctctatgaccttaatatgttcggtttgagcgtgtcttgaagtgagaactgggaaatgcc

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os12g04220.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgt--ttgtgcccatg--atttg---tttactatggt-gtgtctgatggtattaagtgtagcagttctttgt----actgtttttgctttgttgcttg--gcatcttgttttttc--------------------------------------------------------
||||| |||||| ||  |||| || |||||||| || ||||||||||||||| | || ||  |||| ||||||||||||||||||||  | ||||| |||||  |  | || |||   ||      |||  |  || |  ||    |  |||||      ||| | |||      | | | |  |  ||    |||   | ||   |||  | |                                                        
GTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATGATGCTCCTGCATTACACGAAGCAGATATTGGGCTTGCTATGGGCATTGCAGGAACAGAGgtactgtttcctatgcagttcaaaacttatgaacgtagcatcaatagacattaaaaaagtcagatatttaggacgaatatgtcagtattcactcttactgaattaagttgatcctgataatccatttttcatcttctgaaatggagtaattttgtcttgtatttgtgcag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os11g04460.1 (Oryza sativa), 5'ss of exon 4
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgt--ttgtgcccatg--atttgtttactatggt----gtgtctgatggtattaagtgtagcagttctttgt----actgtttttgctttgttgcttggcatcttgttttttc-------------------------------------------------------------------------------
||||| |||||| ||  |||| || |||||||| || ||||||||||||||| | || ||  |||| || |||||||||||||||||  | ||||| |||||  |  | || |||   ||       |||||     |  ||    |  |||||      ||| | |||      | | | |  |  ||  | |||       |   ||  |                                                                               
GTTTGATGAGGTGGTTTCTGTGACAGGTGATGGTACAAATGATGCTCCTGCATTACACGAAGCAGATATCGGGCTTGCTATGGGCATTGCAGGAACAGAGgtactgtttcctatgcagttcaaaacttatggatgtagcatcaatagacattaaaaaagtcagatatttaggacaaatatgtcagtattcattcttactgaaataagttgaccctgataacccattttggatactttgtattttctttttcatcttctgaaatggagtaattttgtcttttatttgtgcag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G104730_T02 (Zea mays), 5'ss of exon 5
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgt-----ttgtgcc-catgatttgt----ttactatggtgtgtctgatggtattaagtgtagcagtt-----ctttgtactgtttttgctttgttgcttggc-atcttgttttttc---------------------------------------------------------
|||  | ||||| || ||||| || || ||||| |||||||| ||||| ||| |||||||  |||| ||||||||||| ||||||||| | ||||| |||||      | | || |   |||| |    ||  ||  |||  | | |     |   |    ||  |      ||  | |||  |         ||||  ||| ||| ||   ||                                                           
GTTCAGGGAGGTGGTTGCTGTGACAGGCGATGGTACCAATGACGCTCCAGCATTGCATGAAGCAGATATTGGGCTTGCAATGGGCATAGCAGGAACAGAGgtactaactatacctcgcaatttctactgttcttactgtgaatgtaaaaacctcttgcaaggccatcagaagctaagaactcctcacttgcaattgcaaggccatcatgcccttcggcaattctgtgcgtcccttgaaaagataaataacagtataagcttacatacttgcag

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G305159_T02 (Zea mays), 5'ss of exon 5
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttactatggtgtgtctgatggtattaagtgtagcag-ttctttgtactgtttttgctttgttgcttggcatcttgttttttc-
|| |   ||||| || || |||||||||||||||||||||||||| || ||| ||  |||||||||||| || || || ||||| ||  | || |||||||| |||   |  | ||| | | |  ||   ||  |  |     | | |  |   | ||| |  |       |   ||  | || |      |||  |  |  
GTATCAAGAGGTGGTGGCAGTTACTGGTGATGGAACCAATGATGCCCCAGCATTGAGTGAGTCAGACATAGGTCTGGCCATGGGAATTGCCGGCACTGAGgtatgtcttcgag-tttctatgcc-tgccttgcgtactccctctgattccaaaggattcatcatggaaaaatactttcatagcatatagctttgagtaattc

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G57330.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttactatggtgtgtc-tgatggtatta-agtgtagcagttctttgtactgtttttgctttgttgcttggcatcttgttttttc
  | || ||||| || || || ||||| |||||||| ||||||||||||||| |||||||| | |||||||| ||||| ||||| ||| ||||||| |||||    |||  || ||    |    |  || ||  | |    |||  |   | |  ||||| | |  |       |     |      ||    |       
AATGGGAGAGGTAGTTGCAGTGACTGGGGATGGAACAAATGATGCTCCTGCATTGCATGAGGCTGACATTGGACTTGCCATGGGAATAGCTGGAACAGAGgta---gcctttggttctcctctgttactgagttattaaatcattgtaaaatcgatgttctctatgttaaaaactcccgcgtatacaacacacag-------

upper sequence: GLYMA02G32780.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g08960.t01 (Vitis vinifera), 5'ss of exon 4
GTTTGGTGAGGTTGTAGCTGTTACTGGTGATGGAACCAATGATGCTCCTGCACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgcccatgatttgtttac-tatggtgtgtctgatggtattaagtgtagcagttctttgtactgttt-ttgctttgttgcttggcatcttgttttttc
|| |||||||||||| || || || |||||||| || |||||||| || ||  |||||||| | |||||||||||||| ||||||||| ||||||| ||||||||       ||     |||  ||       |||| |  || |     || | ||| | | |  | ||  ||||   |||  ||   |  || ||  |  
GTATGGTGAGGTTGTTGCAGTGACAGGTGATGGGACAAATGATGCACCAGCTTTGCATGAGGCTGACATTGGGCTTGCCATGGGCATAGCTGGAACAGAGgtttgcttatccgaccatcttatgtactagtcatctgtttttactgcccttatctgttgtctttcttcttggttgcacagttattttttagttttttgat--

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151405499|gb|EV275313.1|EV275313
EST:     CACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAG                         GTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACT
genomic: CACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgccc ... ccttttacagGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACT
EST: gi|14999736|gb|BI320550.1|BI320550
EST:     CACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATAGCTGGAACAGAG                         GTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACT
genomic: CACTGCATGAGTCAGACATTGGGCTTGCTATGGGCATATCTGGAACTGAGgtttgtgccc ... ccttttacagGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACTACT