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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAAATGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAGgtacgttacatatatgctttgactagtactatattatataaccatattttctgctaactttttaaatgagtgcatatatacccactagggtcgctctaat...

Basic information

species Glycine max
transcript GLYMA02G30090.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G30090.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g06160.t01 (Vitis vinifera), 5'ss of exon 10
ATCAGACTCTCTGTGGTGTCCTCCAAATATGACTAACTACATGGGACAAATGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAGgtacgttacatatatgct-ttgactagtactatattatata-accatattttctgctaactttttaaatgagtgcata-tatacccactagggtcgctctaat
 |||||||| ||| |    ||||| || ||| | ||||||||||| || |||||| | || || ||||||||||| || |||||| | ||||| ||||||||| || |  |  || || ||    ||   |    | | || |  ||||         ||   |  | || |  | || |  |  |  |||  ||        
TTCAGACTCACTGAGCGCGCCTCCTAACATGGCGAACTACATGGGTCAGATGGCTATTGCCATGAACAAACTCTCTACTCTTGAAGGATTTGTTAGACAGgtatgtaatttcaatactatttttcagagttggtgtgtgtataatatatcaaggcgagacaactggattgggaacctactccaatccttagattcatgaa---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120492828|gb|EH220995.1|EH220995
EST:     TGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAG                         GCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACA
genomic: TGGCTGTGGCAATCAACAAACTCTCCACCCTTGAAAGCTTTGTGAGACAGgtacgttaca ... tgacttacagGCTGATAATCTGAGGCACCAGACAATTCACCGTCTCCACCAACTTCTAACA