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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGgtatgatatgtcctcctttccacctaatattttcagtactaacaacaatttgtgaatttgttcttttttggggattaattcagtaggttattgaattttaagtatttgttgattaagttcaaaagattgacagaaaaggcatatacag

Basic information

species Glycine max
transcript GLYMA02G26820.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G26820.2 (Glycine max), 5'ss of exon 3
lower sequence: AT3G11945.1 (Arabidopsis thaliana), 5'ss of exon 4
TTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGgta--tgatatgtcctcctttccacctaatattttcagtactaacaacaatttgtgaatttgttcttttttggggattaattcagtaggttattgaattttaagtatttgttgattaagttcaaaagattgacagaaaaggcatatacag
    || ||| | |||||||||||  |||| ||||||||||||||||| ||  | ||||||||| | || || ||||||||||||||||| ||||||||||||  || | | |  | |||   |   |||||    |  |||| || |  | |||||  || ||| |   | ||||    || |  |  | |||   | || |  |||| || || |                                 
AAGCCTATACTCTCTTGGCCTTTTTCTGGGAACCATCTATTCTGTTCCACCCCTCAGAATGAAAAGATTCCCAGTTGCAGCATTTCTTATTATTGCCACGgtaaatgctgttttatgcttcttaatcaatat----acaactatcacct-tatgtgatatttttcgtggcttgggaacttttaataacataattctgtattga-catttctt-atcag--------------------------------

upper sequence: GLYMA02G26820.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv08s0007g07200.t01 (Vitis vinifera), 5'ss of exon 4
TTCTCTTTACACACTTGGCCTTTTCTTGGGTACCATCTATTCTGTTCCTCCATTTAGAATGAAACGCTTTCCTGTTGCAGCATTTCTTATAATTGCCACGgtatgatatgtcctcctttccacctaatattttcagtactaacaacaatttgtgaatttgttcttttttggggattaattcagtaggttattgaattttaagtatttgttgattaagttcaaaagattgacagaaaaggcatatacag
||| ||||||   ||||||||  |  | || ||||||||||||||||||||||||||||||||  | ||||| |||||||||||||| |||||||| |||||||   || |  |||| |||   |  | | |    |  ||| |||      ||| |   ||   |   | | | |  |||||| | |  ||| ||    |   | || |                                      
TTCGCTTTACTGTCTTGGCCTCGTTCTTGGCACCATCTATTCTGTTCCTCCATTTAGAATGAAGAGATTTCCAGTTGCAGCATTTCTAATAATTGCGACGgtatagcat-ttgtcctctcccttttttctatcggatggtaataac------tgagtggattgagtaacgtgaagt--ttcagttg-tagttggatccatatggtatggt--------------------------------------