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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGGCAGTCCAgtaagtatttttataattgttctcattttttcatctggatcatatttattatgtaaaaatattgaaaatatttagttgtgctaggagggcaagtggccca...

Basic information

species Glycine max
transcript GLYMA02G25240.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G420865_T02 (Zea mays), 5'ss of exon 5
CATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGGCAGTCCAgtaagtatttttataattgttctcattttttcatctggatcatattta---ttatgtaaaaatattgaaaatat-ttagttgtg-ctaggagggcaagtggccca---
| ||  |  | |||   || ||  |  |  | || |||||||||||  | | |||||| ||||| || ||||||||||| |||||||||||||| |  ||||||||   | ||||| |    ||||| ||| || || ||||| |||    |||  | |   | |||  |     | ||   |   ||  |   ||| ||    |   
CTTTCTCTTTGCCTGTGTTGGAACGTCTACTTTTTCGTCCAAAGCGTGTACCTGCAATTAGGGTGCTTATTCTTACTCCAACCAGAGAGTTGGCTGCTCAgtaagt---tctataaat----tcattgttttatatg-atcatcttttggcttacttcattgtgttgttagcccatcagacataattaaaactacaattgtattatct

upper sequence: GLYMA02G25240.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g14540.t01 (Vitis vinifera), 5'ss of exon 4
CATTTGCACTACCTACTTTAGAGAGGTTGTTGTTCCGTCCAAAGCGCATGCGTGCAATAAGGGTCCTCATTCTTACTCCGACCAGAGAGTTGGCAGTCCAgtaagtatttttataattgttctcattttttcatctggatcatatttattatgtaaaaatattgaaaatatttagttgtgctaggagggcaagtggccca-----
| ||| |  ||||||| ||||||||||| |||||||||||||| ||  |||  ||||| ||||||||  |||||||||| |||||||||||||| || |||||||| || ||    |||| |   || |   ||     |  | ||||| || |||   ||||  | | || | | | |  |  |        | |         
CCTTTTCCTTACCTACATTAGAGAGGTTATTGTTCCGTCCAAAACGTGTGCAAGCAATCAGGGTCCTTGTTCTTACTCCAACCAGAGAGTTGGCTGTTCAgtaagtgttatt----ttgtccaagttatactatagtttttttgtttataat-taagtttatttcataaatgtggatctcttgtgcatattgtttgtgtgtggta