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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag

Basic information

species Glycine max
transcript GLYMA02G17430.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g15310.1 (Oryza sativa), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttct-tagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
||||| ||||  |||||| | ||||| || || ||||| ||||| || ||||| ||||| |||||||||||||||||||| ||   |     || |  || ||     || | |   |  |||  |  ||||      || | |    |     ||| | ||||  |  |||||  | | | ||  |                            
GATGGTGATAAGTTTTGGAGGATGCCAGAATGTTACATCCGTGGGAACACCATCAAGTATCTTCGGGTTCCTGATGAGgtatggatt-----tttaacatgttaaacctt-gtttactatgtgcttgtggtttgctggttgtatgtttagacatgtatgttctccatc-tgcat--aatcagccttt----------------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G095114_T01 (Zea mays), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
||||| || |  |||||| | ||||| ||||| ||||||||||| || ||||||||||| ||||| |||||||||||||| ||   | ||   | | |      | |   | | || |   | | |   | |  |   || ||   |    ||      |||   | ||   |    || ||                                
GATGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGTGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatgaatttcttggttaatgag---ggtagctacactctatttcagttttgcttgg---ttgtttatgcgcttctaggcttctactttatttttttccttgtcat------------------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G038606_T03 (Zea mays), 5'ss of exon 3
----------------------GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
                      || || || |  |||||| | ||||| ||||| |||||||| || || ||||||||||| ||||| |||||||||||||| ||   | ||   | | |     |      | |||| |            |||||   | ||| |  | |   ||    ||||  ||||   | | ||       |||  |                       
TTTATGATGGCTCGAATTGCAGGACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggatttcttggttaatgagcctagccaat-ctctat------------ttcagttttgcttggttatttatgtgc-ttctccctgatttcttccttgtcattatgacatg----------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G038606_T02 (Zea mays), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
|| || || |  |||||| | ||||| ||||| |||||||| || || ||||||||||| ||||| |||||||||||||| ||   | ||   | | |     |      | |||| |            |||||   | ||| |  | |   ||    ||||  ||||   | | ||       |||  |                       
GACGGTGACAAGTTTTGGAGGATGCCAGAGTGTTACATTCGCGGGAACACCATTAAGTATCTTCGAGTTCCTGATGAGgtatggatttcttggttaatgagcctagccaat-ctctat------------ttcagttttgcttggttatttatgtgc-ttctccctgatttcttccttgtcattatgacatg----------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: AT5G27720.1 (Arabidopsis thaliana), 5'ss of exon 5
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
|| ||||||||||||||| | ||||| || || || || ||||| || || || ||||||||||| ||||| ||||||||   |  |     ||  || | | ||| | |   ||| |   |  ||   |||      |||||      |||      ||||| |  |||       ||| |||   | | | ||                   
GACGGAGATAGATTTTGGAGGATGCCGGAATGTTATATCCGTGGTAACACAATCAAGTACCTTCGAGTTCCGGATGAGgtaattttt-----ttttgtgtgtgtgtgtatatatctcttgcttgatctagttt----tttctt------tgttcccctctctctggaatgatgatgcttagcca---aatcagata------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv14s0060g02240.t01 (Vitis vinifera), 5'ss of exon 4
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgct--tcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
||||||||||| |||||| | ||||| || |||||||||||||| ||||| |||||||| ||  | || ||||| ||||| | |   | |  |  |   ||| |  ||||   ||| | |   |  || |  |||| |  || |       |||  || |||           ||   | ||  | |  | |                        
GATGGAGATAGGTTTTGGAGAATGCCAGAATGCTACATTCGTGGGAATACAATTAAGTATCTCAGAGTCCCTGACGAGgtatatttggtttttcattgatatctaagtttaaagctatattgct--attatattcata-tttatgcttctttgttataggct-----------atatttctaaaccccaagt------------------------

upper sequence: GLYMA02G17430.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00230.t01 (Vitis vinifera), 5'ss of exon 6
GATGGAGATAGATTTTGGCGTATGCCTGAGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctgctgcttcagtatttttgttttttgctctttcagtgaataaggttcagaacttcttagggaatgtcgtaagctctcggtgatgcatgcatttatccactgatttaaatttacttcctgttcatttag
||||||||||| |||||| | ||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||||||||| |||              || ||  |    || |       | |   |  |  |  || |   || | ||        |  ||  || |      | || ||   || |   | |||                 
GATGGAGATAGGTTTTGGAGAATGCCTGAGTGCTACATCCGTGGGAATACAATTAAATATCTTCGAGTTCCTGATGAGgtatgt---------ctgaaatcttcctcacatgtt-------taagctaaatctatgaccttacagtgcattcttgttacgttctttgct-----tagttgtcttttggtcctattttgt---------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7639290|gb|AW733616.1|AW733616
EST:     AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG                         GTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
EST: gi|254324586|gb|GR834011.1|GR834011
EST:     AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG                         GTTATTGACAAAGTCCAGGAGGAAACAAAGAGCCGTACTG
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG
EST: gi|298174084|gb|HO017420.1|HO017420
EST:     AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAG                         GTTATTGACAACGTCCAGGAAGAAACAAAGAGCCGTACTG
genomic: AGTGCTACATTCGTGGCAATACCATTAAGTACCTTCGGGTTCCTGATGAGgtgtgtgctg ... gttcatttagGTTATTGACAAAGTCCAGGAAGAAACAAAGAGCCGTACTG