1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
AAATACATTGAAGAAACCTTTGGAAGTTGGGCAGTGTTCCGGCCACAGTACATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaactttctaaacaaactttattattagcttttaatactacatatgaatccttgtttcaataaataatcttttctagaaggatcaatactaaaaacaatgtgcaatgtcatatttgtag
species | Glycine max |
transcript | GLYMA02G16620.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|10235476|gb|BE804364.1|BE804364
genomic: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|209702437|gb|BW652232.1|BW652232
genomic: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCAEST: gi|10256057|gb|BE823823.1|BE823823
genomic: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: AATAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCNTGGCTCGGGACTGCAACTCAEST: gi|9986800|gb|BE660908.1|BE660908
genomic: AATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
EST: ATGATTGGGTCTGGCACCATTAAAGACTGTNAGGAGTGGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGEST: gi|209725990|gb|BW672411.1|BW672411
genomic: ATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGG-TTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTG
EST: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACA GGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
genomic: CATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaa ... atatttgtagGGATTGTTCGGGACAGACCTGTGCCAATTCCTGGCTCGGGACTGCAACTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAATACATTGAAGAAACCTTTGGAAGTTGGGCAGTGTTCCGGCCACAGTACATGATTGGGTCTGGCAACAATAAAGACTGTGAGGAGTGGTTTTTTGACAgtaaggggaactttctaaacaaactttattattagcttttaatactacatatgaatccttgtttcaataaataatcttttctagaaggatcaatactaaaaacaatgtgcaatgtcatatttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG