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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag

Basic information

species Glycine max
transcript GLYMA02G16130.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os03g58240.1 (Oryza sativa), 5'ss of exon 5
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatc--atgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttg-tgtttgcttttgcag--------------
||||| | ||  |||| ||| ||||   || |   |||||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||   ||     | ||   |||         |||    ||   |  | |||||| |    ||||  || |||||| | |    || | ||               
CACCTGTTGAAATGGACATTGATGGTTCAAAAGTGTCTGTCCTTTACCTTGATACTGAAGGATTTGAGAGTGTTGGGAAGTCAAATGTATATGATGATAGgtctgtgtgcagaaatggaatgtgaagaagtttcccatttactttttctatgatagaaaggttacattgttgttggtatcattttattcatttcttttgtggcag

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G019361_T01 (Zea mays), 5'ss of exon 5
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgta-attgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag
| ||| | ||  ||||| || ||||    | |  ||||||| |||| || || || ||||||||||||||||||||||| || ||||| ||||||||| |||   | |||   | |     |||||||  ||   | ||  |  ||  || |||   || ||||  | || |     || |||| | ||
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCATTTATCTAGACACTGAAGGATTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtggctagaaaagagctcattctgatttactttttctaggatggataattaacta-ttagaatgttctc----tttctttggtag

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G305254_T07 (Zea mays), 5'ss of exon 4
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatca-tgcattctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag
| ||| | ||  ||||| || ||||    | |  ||||||| |||| || || || ||||| ||||||||||||||||| || ||||| ||||||||| |||   |||    | |  |   ||||| |  ||   | ||     | |  | | | ||    |   || ||  | || | |         
CTCCTGTTGAGATGGATGTTGATGGTTCCAAAGTTTCTGTCCTTTATCTAGACACTGAAGGGTTTGAAAGTGTTGGGAAATCAAATGTGTATGATGATAGgtttgtgccgagaaacgaactcattccgatttactttttcttggagaattaactattagaatgttttctttctttggtag---------

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G030138_T01 (Zea mays), 5'ss of exon 5
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgta-attgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattg--tttagttagctttttgttgtgtttgct-tttgcag---
| ||  | ||  |||||||   |||    |     |||||  | ||||| || || ||||||||||| |||||||| || || ||||||||||||||| |||   ||||   || || |      |    |||||  ||  | | | |  | |||    | | ||      | |||  ||| ||  |||      
CCCCCGTTGAGGTGGATATCGGTGGCTCCAAGGTGTCTGTTCTATACCTGGACACCGAAGGATTTGAGAGTGTTGGAAAATCAAATGTATATGATGATAGgtttgttgccgacatataagatgcacataattctgaattatagccttttggtttggacgtggctacggacatattggattttctgcttgtgacag

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: AT2G38840.1 (Arabidopsis thaliana), 5'ss of exon 5
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgc----tttcagatcatgcat-tctgtgttctgtgttgaatcatatatgattgtttagttagctttttgttgtgtttgcttttgcag
||||  ||||  |||| ||| ||||||||| |||||| ||  ||||||| || || || ||||| ||||||||||| ||||| ||||| |||||||| |||||         || ||     ||||  | |    | |   |||    |  | ||| | | || | |  ||     |||||     ||     
CACCATTAGAGCTGGAGATTGATGGAGTAAAAACTTCCGTAATTTACCTCGACACTGAGGGATTCGAAAGTGTTGGAAAGTCAAATGTTTATGATGACCGgtacccagacagttgcaacatttgcacatttaaacttttctttgcggaagctctgaatatctaatcaattt----ctgtgtaaatattcag--

upper sequence: GLYMA02G16130.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0141g00110.t01 (Vitis vinifera), 5'ss of exon 5
CACCTATAGATTTGGATATTAATGGAGTAAGAACTTCTGTCTTTTACCTTGATACAGAAGGATTTGAAAGTGTTGGGAAGTCCAATGTATATGATGATCGgtaattgctttcagatcatgcattctgtgttctgtgttgaatcatatatgattgtttagt-tagctttttgttgtgtttgc---ttttgcag
| ||||||||  |||||||| |||||||||  | ||||||  ||||| | |||||||| |||||||||||| |||| ||||| |||||||||||||| |||||||         || | |   |||    | ||  |  | |  |     ||  ||| || || | |    ||    || |   ||||||||
CCCCTATAGAAATGGATATTGATGGAGTAAAGAGTTCTGTGCTTTACTTAGATACAGAGGGATTTGAAAGTATTGGCAAGTCAAATGTATATGATGACCGgtaatcttccagtcatgaagtcatcttcaatatgcatgcagtggttgtaaatctttttgtataacctgcctttccaatttcactttttgcag