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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGTCAGCGGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattattttcaattatattgttcaacttttctgtagttacctgtttgaaatctaaatctgtgttgataatgaaattttttagcttagaaaatgatttag...

Basic information

species Glycine max
transcript GLYMA02G16010.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G16010.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0141g00390.t01 (Vitis vinifera), 5'ss of exon 4
GAAGTCAGCGGATGGCTCATTCTCTTTAAAGACCAACAAAGGTACAGTGGACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattattttcaattatattgttcaacttttctgtagt-tacctgtttgaaatctaaatctgtgttgataatgaaattttttagcttagaaaatgatttag
 || ||||| ||||| ||  | ||||||||||| |||||||| ||||| || |||||||| ||||| |||||||| ||||||||||| ||||||||  ||||    ||||  | | |  || |  |||| | | | || ||||  |||    | |     | ||   || |    | | ||  |  |        |||| |
CAAATCAGCTGATGGTTCTCTGTCTTTAAAGACTAACAAAGGAACAGTTGAAGGTTTCTCCCATATCATGTTTGCAACAGGACGCAGGCCTAATACAAAGgttgatttttgtacttttatggttgacttctatttggtatacccattttct-tttgttgatttgccaatcaaagcaatgttaggtgtgtgtttccattttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237572|gb|BE806460.1|BE806460
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|192318300|gb|FK005804.1|FK005804
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAC                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|19346748|gb|BM891628.1|BM891628
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|151396456|gb|EV266333.1|EV266333
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|192314162|gb|FK011534.1|FK011534
EST:     AGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: AGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|37995669|gb|CF807258.1|CF807258
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCANACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|10231243|gb|BE800059.1|BE800059
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCTGACCTAATACTCAG                         AACTTAGGCCTGTAGTCTGTTGGTGTGAAACTAGCTTAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|7924612|gb|AW830638.1|AW830638
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|8283020|gb|BE020581.1|BE020581
EST:     GGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAAATAGCTAAAGATGGAGCTATA
genomic: GGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|254323695|gb|GR836034.1|GR836034
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA
EST: gi|208065242|gb|GD862150.1|GD862150
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGA
EST: gi|192318301|gb|FK005805.1|FK005805
EST:     ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAG                         AACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCCAAAGATGGAGCTATA
genomic: ACGGTTTCTCACATATTATGTTTGCTACAGGACGCAGACCTAATACTCAGgtattatttt ... ttcactgcagAACTTAGGCCTGGAGTCTGTTGGTGTGAAACTAGCTAAAGATGGAGCTATA