1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCTgtaagttggaagttactatgtttgttgtacacggctgcagataacattaaagtgcacttatagtacctttatagtaccatactattatattcattcgagttttgttgccaatcttcattattaactgaaattttctgattcccacctaattgtttgtgttatgttatgatttcaag
species | Glycine max |
transcript | GLYMA02G15250.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TAAGTTCAGTTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCT GCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAAEST: gi|7233363|gb|AW568710.1|AW568710
genomic: TAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCTgtaagttgga ... tgatttcaagGCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAA
EST: TAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCT GCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAAEST: gi|193682513|gb|FK624227.1|FK624227
genomic: TAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCTgtaagttgga ... tgatttcaagGCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAA
EST: TTACAAACAGCTCT GCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAAEST: gi|57575694|gb|CX548669.1|CX548669
genomic: TTACAAACAGCTCTgtaagttgga ... tgatttcaagGCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAA
EST: TAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCT GCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAA
genomic: TAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCTgtaagttgga ... tgatttcaagGCTTCTAAATTGAAATTAGGGGATATTAAAGGAGCATTGTTGGATACAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGATAAGTTCAGGTTTGAGAAAAACGAAGTCTCAGATTTTTACAAACAGCTCTgtaagttggaagttactatgtttgttgtacacggctgcagataacattaaagtgcacttatagtacctttatagtaccatactattatattcattcgagttttgttgccaatcttcattattaactgaaattttctgattcccacctaattgtttgtgttatgttatgatttcaag
- - - - - - - - - - - - - - - - - - - - - - - CAGCTC