1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgcttgtctgtttgatcttgtgttttagtactaaattagttcataagttatttatattgtacactataccgtcatttgattttcgctaatgttttaattatcag
species | Glycine max |
transcript | GLYMA02G12930.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|207840744|gb|GD810937.1|GD810937
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACAEST: gi|10843368|gb|BF067173.1|BF067173
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACA
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|14011701|gb|BG726623.1|BG726623
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|18690824|gb|BM519672.1|BM519672
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|7284525|gb|AW597114.1|AW597114
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|31468373|gb|CD410401.1|CD410401
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|21887789|gb|BQ741002.1|BQ741002
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|4306793|gb|AI443955.1|AI443955
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|7692312|gb|AW760421.1|AW760421
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|208081589|gb|GD882047.1|GD882047
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACNCAGATCTTCCATCAACACAEST: gi|7924046|gb|AW830054.1|AW830054
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACA
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGTEST: gi|57574121|gb|CX547096.1|CX547096
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
EST: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAG GCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
genomic: CTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgctt ... taattatcagGCTGCTTCTGCCACTGCAAACACAGATCTTCCATCAACACATCCAATCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAAGGTGATTATTTTCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAGGAAAGAGGCAGCTGAGCAGTCACTAAAAGGATACGAGgtacatgcttgtctgtttgatcttgtgttttagtactaaattagttcataagttatttatattgtacactataccgtcatttgattttcgctaatgttttaattatcag
- - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG