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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGGATGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAGgtgtgtatattggcacctttattttgctttttcaatgtcaaaattaattgtctccatttaccacatggcaagatcaataccactatgcaatcacaattta...

Basic information

species Glycine max
transcript GLYMA02G12670.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G12670.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 5'ss of exon 3
GGTGGATGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAGgtgtgtatattggcacctttattttgctttttcaatgtcaaaattaattgtctccatttaccacatggcaagatcaataccactatgcaat-cac-aattta
|||||||| || ||||| ||||||||||| || ||||| |||||||||||||| ||||  ||||||  |     || ||   ||||  |    | |  |||     |     |||   | |||     |   |   |   | | ||| ||  ||| ||
GGTGGATGCCGTACAGGGATGGCTAAAGTAACTAATGCGTACGACCTTCCTGCTAGgtaggtatatcagt--tcttgttcatctttcgctgctttattatttccaattatggttttatatatgttgttactgaagacgagaagaaatgcattaatgta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12773472|gb|BG238399.1|BG238399
EST:     TGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAG                         GAAAGTTATCCATACTGTTGGCCCAAAGTATGCTTCGAAGTACCAAACTGC
genomic: TGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAGgtgtgtatat ... tttcttgcagGAAAGTTATCCATACTGTTGGCCCAAAGTATGCTTCGAAGTACCAAACTGC
EST: gi|208121328|gb|GD919807.1|GD919807
EST:     TGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAG                         GAAAGTTATCCATACTGTTGGCCCAAAGTATGCTTCGAAGTACCAAACTGC
genomic: TGTCGAACAGGTATGGCTAAAGTCACCAATGCCTACGACCTTCCTGCAAGgtgtgtatat ... tttcttgcagGAAAGTTATCCATACTGTTGGCCCAAAGTATGCTTCGAAGTACCAAACTGC