1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCCAGACTACATAGTTCTGAAATCGTTGGATACTGATGGTATCCGTATAATTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAGgttaatatgtgccaaatgtcatcttctttccagtactttgttagccatttgttaacctgaaggaaaaagacaacccttaaaactaaagccattatttttattttaaaagaagccattgactttttggcatttgctctctctcattatcag
species | Glycine max |
transcript | GLYMA02G12560.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAG GTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAAEST: gi|16344619|gb|BI970214.1|BI970214
genomic: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAGgttaatatgt ... tcattatcagGTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAA
EST: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAG GTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAAEST: gi|31458938|gb|CD400966.1|CD400966
genomic: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAGgttaatatgt ... tcattatcagGTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAA
EST: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTTTCTCACAG GTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAA
genomic: TTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAGgttaatatgt ... tcattatcagGTTGATGGTTTAGTTGAAGAGTTTGCTGGCATAAACCGCGGAATGGAGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAGACTACATAGTTCTGAAATCGTTGGATACTGATGGTATCCGTATAATTGGAAGTGTATTGGGACAAAGCATAGCTCTGGATTATTTTGTCTCACAGgttaatatgtgccaaatgtcatcttctttccagtactttgttagccatttgttaacctgaaggaaaaagacaacccttaaaactaaagccattatttttattttaaaagaagccattgactttttggcatttgctctctctcattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG