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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaaattttctattttaaagttgtatttgattatgttctatatatacttatataatttgaaacttgtctccttaacgagttatgaccatcttgcag

Basic information

species Glycine max
transcript GLYMA02G11960.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193302127|gb|FK266962.1|FK266962
EST:     ACTGCCCCCC-ACCTCGTCCTAATCCTGAAGAAACTACCGTTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACC-TTGGACTTGCGTGAT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGAT
EST: gi|15814866|gb|BI787141.1|BI787141
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGGCT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|193480374|gb|FK444680.1|FK444680
EST:     ACTG-CCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|16346362|gb|BI971957.1|BI971957
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCT
EST: gi|23052679|gb|BU577171.1|BU577171
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|15284721|gb|BI468612.1|BI468612
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|23057292|gb|BU577966.1|BU577966
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|18039590|gb|BM307884.1|BM307884
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|193418267|gb|FK383485.1|FK383485
EST:     ACTG-CCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGGTATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
EST: gi|9564988|gb|BE474497.1|BE474497
EST:     ACTGNNNNNNNACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGG                         AGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT
genomic: ACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaa ... catcttgcagAGGTGGCTGGACAATATCTGGCACACCCTTGGACTTGCGTGATCCTCGACT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATATCAACCTGGGTATACTGCCCCCCCACCTCGTCCTAATCCTGAAGAAACTACCATTGATATAGGgtaagctaaaattttctattttaaagttgtatttgattatgttctatatatacttatataatttgaaacttgtctccttaacgagttatgaccatcttgcag

- - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA