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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtatttttagcagtgaaatatactgttagttatcatcaaattaatttttctgcttcattatgcttaaaactattgctttatctagtaatgttcagttt...

Basic information

species Glycine max
transcript GLYMA02G10790.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g07510.1 (Oryza sativa), 5'ss of exon 4
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtatt---------tttagcagtgaaatat--actgttagttatcatcaaattaatttttctgc-----ttcatta--tgcttaaaactattgctttatctagtaatgttcagttt---------------------------------------------------
  | |||||||| || || || |||||||||||||||||| || |||| |||||||||||  |  ||||||| || || ||||||||||| ||||| |||||  |||          || | |    | | |   ||  | | |||||   |    |||| | |||     |||||||  ||||  |   |  || |    | |||    |    | |                                                   
ACGCTTGTTGGCAGTTGAAGGCTGTGCTGCTCTTGGGAAATTGTTGGAACCACAAGATTGTGTAGCACATATCCTTCCAGTTATTGTCAATTTCTCCCAGgtaaattacacccctacttggtacctcagtgtcatctacttgatatcacatataatatttatttgcagacattcattagttgctagaggttcctgatgctccgagttgcttctgttgtatgtgttaccataattatgacatcttttactctctgtaactcattaaatag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G122135_T01 (Zea mays), 5'ss of exon 4
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtatttttagca-gtgaaa---tatactgttagttatcatcaaattaatttttctgctt-cattatgcttaaaactattgctttatctagtaatgttcagttt-------------------------------------------------------------------------------------------
  | ||||||||||| || ||||||||||||||||| ||| || ||||||||||||||||  |  | || || || || || |||||||| ||||| |||||  |||  |  || ||   |   |||||  || |     |  || ||  ||| | ||     ||  |  |   |   ||   ||||  |  ||  | |   |                                                                                             
GCGTTTGTTGGCTGTTGAAGGTTGTGCTGCTCTTGGTAAATTGTTGGAGCCACAAGATTGTGTAGCTCACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggaccctatacattttgcagcaagtaatttgctttctttgtggatatattattgggagacatgtttttagttgctagaggttgataatttctcggagtcgcctcttagttttgcaacttgctgcagttcagtgcattaccgctgataaatgctacttgcatatactcgctttgtttag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G102858_T01 (Zea mays), 5'ss of exon 4
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtat---------ttttagcagtgaaat--atactgttagttatcatcaaattaatttttctgcttc--------attat--gcttaaaactattgctttatctagtaatgttcagttt-----------------------------------------------------------------------------
  || | ||||| || |||||||||||||||||||||||  || ||||||| ||||||||     ||||||| || || |||||||| || ||||| ||||| |||         |||| |  |   |||  ||  ||  ||  |  || || ||     | ||  |||        ||||   |  ||| | |        ||||  || |   || |                                                                               
GCGACTATTGGCAGTTGAGGGTTGTGCTGCTCTTGGGAAGTTGTTGGAGCCCCAAGATTGTGCAGCACATATTCTCCCAGTTATTGTAAATTTCTCTCAGgtatatcttacacacttttggtggcttaataaatgttgggagaaaagataaagttgtcaatactaattctcgtaaaaattactagagtaagatttccataagatctgctactagacaataatttcatgtgcttaagtttcagcacactaccatacatggttaatgatttcaattgcttatgttttcttaacatctcag

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G164352_T04 (Zea mays), 5'ss of exon 4
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtatttttagca-gtgaaa--tatactgttagttatcatcaaattaatttttctgcttcattatgcttaaaactattgctttatc--tagtaatgttcagttt
  |  |||||||||| || || |||||||| ||||| ||| || |||| |||||||||||| |  |||| || || || || |||||||| ||||| |||||  |||  |  || ||   |   ||||     |     |  || ||  ||| | ||  |    ||  |||   |     |   | |  | | |   | ||    
GCGTCTGTTGGCTGTTGAAGGCTGTGCTGCCCTTGGTAAATTGTTGGAACCACAAGATTGCGTAGCACACATTCTTCCAGTCATTGTCAATTTCTCCCAGgtacattgctcccatgttggacccatacatcctgcagcaagtaatttgctttctttgtctggaaata-ttattccccagaccccacccgtgggagcttcca----

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G25800.2 (Arabidopsis thaliana), 5'ss of exon 3
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtatttttagcagtgaaatatactgttagttatcatcaaattaatttttctgcttcattatgcttaaaactattgctttatctagtaatgttcagttt
|||||| ||||| || |||||||||||||||||||||||| || ||||||| || |||||  ||  ||| || || || || ||||| || ||||||||||||   || |  | ||    | |  || |  | ||| |  | ||||      ||||| ||    |||   ||| || |  |    ||             
TAGATTATTGGCCGTTGAGGGTTGTGCTGCTCTTGGGAAATTGTTGGAGCCTCAGGATTGTGTCCAACACATTCTTCCCGTGATTGTTAATTTCTCGCAGgtga--ttatgtctgtaggcttttatgctgatgatc-tacatttaaaagaaatgcttaat----ctttgtactttttcactgagcag-------------

upper sequence: GLYMA02G10790.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G13320.2 (Arabidopsis thaliana), 5'ss of exon 4
TAGATTGTTGGCTGTGGAGGGTTGTGCTGCTCTTGGGAAACTGCTGGAGCCACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgt--------gtatttttagcagtgaaatatactgttagttatcatcaaattaatttttctgcttcattatgcttaaaactattgctttatctagtaatgttcagttt--------
|||||| |||||||| |||||||||||||||||||||||| || ||||||| || || ||  |  |||| || || || || |||||||| |||||||||||        || |   ||  |   ||| || || ||  | | | | |    ||   |          ||||  | |      |||||||||| |   | ||  || |        
TAGATTATTGGCTGTTGAGGGTTGTGCTGCTCTTGGGAAATTGTTGGAGCCCCAGGACTGTGTTGCACACATTCTTCCTGTGATTGTCAATTTCTCGCAGgtaaataaatgtgtgaatatgataaaaaaattctattgatgagctttatgggaaagctgtaaggcagatatgtatgag----ctgctttatcttgatttttttcgtctttgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325432|gb|FK017188.1|FK017188
EST:     CACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAG                         GACAAGTCGTGGCGTGTGCGGTACATGGTTGCAAATCAATTGTATGAGCTT
genomic: CACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtattttt ... tcccaaacagGATAAGTCGTGGCGTGTGCGGTACATGGTTGCAAATCAATTGTATGAGCTT
EST: gi|7146818|gb|AW508740.1|AW508740
EST:     CACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAG                         GATAAGTCGTGGCGTGTGCGGTACATGGTTGCAAATCAATTGTATGAGCTG
genomic: CACAAGATTGCATCACACATATACTACCGGTTATTGTCAACTTCTCGCAGgtgtattttt ... tcccaaacagGATAAGTCGTGGCGTGTGCGGTACATGGTTGCAAATCAATTGTATGAGCTT