Sequence
atgc intronic sequence ATGC exonic sequenceGCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGCCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGgtagctctctgaccttgaggctttagtgctaccagtagtattttgctcacagatgaatgattcatggtacaataatttgaactaggttgtacgttaacta...
Basic information
species | Glycine max |
transcript | GLYMA02G10220.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G04950.1 (Arabidopsis thaliana), 5'ss of exon 5
GCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGCCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGgtagctctctgaccttgaggctttagtgctaccagtagtattttgctcacagatgaatgattcatggtacaataatttgaactaggttgtacgttaacta-------
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GCCCCGCTGCCAAAAGCTCCCCTTGATACTGAAATTGTTTGTCACTGGCTGGCTATTGAAGGAGTGCAACCAGCTATACCAGAAAATGCTCCTTTAGAAGgtttgtctctcaatcttatgccctgg-gctag-agttgtaaagtcattata--tgaatttttcaacatgaaacaaat---attagtatgtacaatgacgtttcagag
upper sequence: GLYMA02G10220.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv12s0059g00300.t01 (Vitis vinifera), 5'ss of exon 4
GCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGCCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGgtagctctctgaccttgaggctttagtgctaccagtagtattttgctcacagatgaatgattcatggtacaataatttgaactaggttgtacgttaacta----
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GCTCCTTTACCGAAAGCACCACTTGATGCTGCAGTAGTTTGTCACTGGCTGGCTATTGAAGGTGTACAACCAGCTATTCCAGAAAATGCTCCAGTAGAAGgtctgtctctaaagtttaag-tctagag-taacagtatctgttcatgcatacttaaaaaaaactta--cctggaatgttatctagaaattaggattatcaattcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209716202|gb|BW654250.1|BW654250EST: TGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAG TAATTTCAGCTCCTTCTGATGTCAAAAAGCATGAGC
genomic: TGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGgtagctctct ... ttatttgcagTAATTTCAGCTCCTTCTGATGTCAAAAAGCATGAGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTTCTTTACCAAAGGCACCCCTTGATACTGCAGTTACATGCCACTGGCTTGCCATTGAAGGTGTGCAACCTGCTATTCCGGAAAATGCTCCTGTAGAAGgtagctctctgaccttgaggctttagtgctaccagtagtattttgctcacagatgaatgattcatggtacaataatttgaactaggttgtacgttaacta
- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG