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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagcatagctcaaacaatatagttttacactgatatttttagttagatgggcactcaagtcttgaccatgaattcattttctatgcag

Basic information

species Glycine max
transcript GLYMA02G08440.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G08440.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv18s0001g01940.t01 (Vitis vinifera), 5'ss of exon 5
CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagcatagctcaaacaatatagttttacactgatatttttagttagatgggcactcaagtcttgaccatgaattcattttctatgcag
    || | |||||||||||||||| ||| | ||||||||||||||||  | |    | | |  | | ||||    ||||   | |   |||  |  ||   |    |  |   |    || | ||   |  ||
---TAGGAGCTGATATGGACTTTGGCGACTTCGATTTTTCTgtaagtactaaattggacatatgaaaattttgt-ttgatgcgtgtg--tagcagctcatggacacatataaatttgtgtcttctttattttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7042420|gb|AW472314.1|AW472314
EST:     CTGCAGCATCTGATATGGACTGTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTG
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTG
EST: gi|254343607|gb|GR857363.1|GR857363
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|8402677|gb|BE058311.1|BE058311
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTNTGATGCTGCAGGCGAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|298162968|gb|HO011701.1|HO011701
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|192302805|gb|FG998487.1|FG998487
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGANNNNNNN                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|9985951|gb|BE659957.1|BE659957
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|193599852|gb|FK551591.1|FK551591
EST:     CTGGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CT-GCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|298172800|gb|HO020354.1|HO020354
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|192302804|gb|FG998486.1|FG998486
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
EST: gi|24205344|gb|BU964597.1|BU964597
EST:     CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCT                         AAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT
genomic: CTGCAGCATCTGATATGGACTTTGGTGACATTGATTTTTCTgtaagtagca ... ttctatgcagAAGATGAGCATGGGAGGGGGTGAGGGATTGGATTTTGATGCTGCAGGCAAT