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AAAGCTCTTGGGAGGGGGCTTGCATAACAGTACTGTAGTTCGAGGATTGGTTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttctattgtgttgaattctttttgtttaattggagagtctactatataatttatttgtattttgttgagagtgagatccttcacaactgtctca...
species | Glycine max |
transcript | GLYMA02G07910.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAG GTTGCTGTNGTT-GCTAGTGGTGTTGATACATCTGCAACTGEST: gi|16997151|gb|BM086523.1|BM086523
genomic: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttct ... gttttttaagGTTGCTGT-GTTTGCTAGTGGTGTTGATACATCTGCAACTG
EST: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAG GTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGAEST: gi|193548048|gb|FK505217.1|FK505217
genomic: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttct ... gttttttaagGTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
EST: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGGAG GTTGCTGTGTTTGEST: gi|26045600|gb|CA783137.1|CA783137
genomic: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttct ... gttttttaagGTTGCTGTGTTTG
EST: GTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAG GTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAAGAEST: gi|298187418|gb|HO034567.1|HO034567
genomic: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttct ... gttttttaagGTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
EST: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAG GTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
genomic: TTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttct ... gttttttaagGTTGCTGTGTTTGCTAGTGGTGTTGATACATCTGCAACTGAGACTAAAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGCTCTTGGGAGGGGGCTTGCATAACAGTACTGTAGTTCGAGGATTGGTTCTGAAAAGTGATGCTGTCGGGACTATAAAGCAAGCAGAAAAGGCGAAGgtgagcttctattgtgttgaattctttttgtttaattggagagtctactatataatttatttgtattttgttgagagtgagatccttcacaactgtctca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tccttcac