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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatcaattgctatgaataataactttcatttttacttttgttgttcttgaatttgggttgaaaccttcataagctctactttggccattttttt...

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 4
lower sequence: AT5G18230.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatg----------aaatcaattgcta-----tgaataataactttca------tttttacttttgttgttcttgaatttgggttgaaaccttcataagctc---tactttggccattttttt------------------------------------------------------
|| || | |||||| || || ||||||||||||||||||||||||||||||||  |            ||      |||     |||| |  ||| |  |       |  |  |  || |||| ||||| |  ||||||        | |       |  || || | || |  |                                                      
GACCCAAAAGAGAAAGCAAAGTCAGAGACAAGGGATTGGTTGAACAATGTGgtgagttgttttcgcgtattcgcgcctaattattgaacagaaacgtcaaaaaagactaatgttaatggtgtttttgaaatatggttgatgtgcgagtgaaactaggtgattcggtccttatgatcatcttctgtcagtgctctagctgattcattacttattttcttgattttgatag

upper sequence: GLYMA02G07830.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 5'ss of exon 4
GATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatcaattgctatgaataat--aactttcatttttacttttgttgttcttgaatttgggttgaaaccttcataagctctactttggccattttttt
|| || |  |||||||||||||||||||||||||| |||||||||| |||||| || ||  ||    | ||  ||||  |  ||| ||  || ||||   |        |  ||| ||      ||  |    ||| ||||  | ||||||  
GACCCAAAGGAGAAGGCTAAATCAGAGACAAGGGACTGGTTGAACACTGTGgtttgtaactaagccttttgcttaattcatgttttatactttctttgcctaaaaacagaactggtttttcttatttcttttttcttcttttac-atttttg-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599213|gb|DB959995.1|DB959995
EST:     ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTG                         GTTGGGGAGTTAGAAAATCAAATCGATAACTTTGAAGCTGAGCTTGAGGGA
genomic: ATCCTAGAGAGAAGGCTAAATCAGAGACAAGGGATTGGTTGAACAATGTGgtatgaaatc ... gtttgagtagGTTGGGGAGTTAGAAAATCAAATCGATAACTTTGAAGCTGAGCTTGAGGGA