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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTGTTTTTATTTCCATTTTTTAGGGGACAGATGAGACTTGCACTGTCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacgtacagatgtaatttcaacgattttgtataaccatcataattataaaagcattacatttaga...

Basic information

species Glycine max
transcript GLYMA02G06370.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G06370.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv06s0004g00180.t01 (Vitis vinifera), 5'ss of exon 9
TTTCTGTTTTTATTTCCATTTTTTAGGGGACAGATGAGACTTGCACTGTCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacgtacagatgtaatt----tcaacgattttgtataaccatcataattataaaagcattacatttaga---------------------------------
                          | || ||||||||| |  || |  ||||| |||||||| || || |||||||||||| |||| ||||||||||||||||  |   | |||    |||   ||  || | |   |    |||    |    |  |  | |  |||  |  ||  | |    || |     | |||  ||                                 
--------------------------GTGAGAGATGAGACATATACAGCGTTTGAGAACATATACCCTGTCCTTACTGAGTTCCGGAAGAACCAACAATGgtatgtttacttgttttttgattatgctacttgaatgtttttccatgatgctctgtttgattaatccgtaggaatatt-tgagggcaagaaatggaaattctgaatcttattgagggtgtttgggttggtatggtag