1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttttttttattggtttgggtttgattgggttggttatggttaattatttggtgatgactttgggaacatttttag
species | Glycine max |
transcript | GLYMA02G06190.3 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CGCTGAGCAAAGTTTCCATCCGTGCCGGTGA-GGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCEST: gi|192310829|gb|FK000315.1|FK000315
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCEST: gi|58024926|gb|CX711667.1|CX711667
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCAAAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCEST: gi|151407570|gb|EV277385.1|EV277385
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
EST: CGCCGAGCAAAGTT-CCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCEST: gi|193723936|gb|FK656314.1|FK656314
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCCEST: gi|209711476|gb|BW665228.1|BW665228
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
EST: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAG GAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
genomic: CGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttt ... acatttttagGAGATTAAGACCGTGGAACTCGTGAAGCCAACTGGGTGGGTTTATCTATCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATTGTGCTGTACGTGGATTTCAAGCTTGATGAGAGTTACACGCCGAGCAAAGTTTCCATCCGTGCCGGTGATGGTTTTCACAACTTGAAGgtaaattttttttttattggtttgggtttgattgggttggttatggttaattatttggtgatgactttgggaacatttttag
- - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG