1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CTGCCAAAAGGATAAGAAGGGCAACAGGCACCGGTTTTGTCATATCCTTGGCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagtttttggtctatagaaaccttacattcatatcaattttcaaattgccttacatcatcttatccacaacttaatgttgcccttttggcag
species | Glycine max |
transcript | GLYMA02G06180.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAG GTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACAEST: gi|192329295|gb|FK020214.1|FK020214
genomic: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagttttt ... cttttggcagGTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
EST: GTTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAG -TCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACAEST: gi|151394230|gb|EV264101.1|EV264101
genomic: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagttttt ... cttttggcagGTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
EST: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAG ATCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACAEST: gi|208096912|gb|GD894649.1|GD894649
genomic: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagttttt ... cttttggcagGTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
EST: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAG GTCTAAC-TTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACAEST: gi|193437842|gb|FK399621.1|FK399621
genomic: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagttttt ... cttttggcagGTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
EST: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAG GTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
genomic: GCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagttttt ... cttttggcagGTCTAACTTTTTGGGTACCAAGTTCACCGTATATGACAGTCAAGCTCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGCCAAAAGGATAAGAAGGGCAACAGGCACCGGTTTTGTCATATCCTTGGCTGCTGATGATTTTTCTCGAGCCAGCAACAAATATGTTGGTAAACTAAGgcaagtttttggtctatagaaaccttacattcatatcaattttcaaattgccttacatcatcttatccacaacttaatgttgcccttttggcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT