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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGgtaaatatctttatcagtgtttttcaaaaagctggtgcttctacattttacttaacagtttgcaatttaaacag

Basic information

species Glycine max
transcript GLYMA02G05650.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os08g43400.4 (Oryza sativa), 5'ss of exon 4
ATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGgtaaatatctttatcagtgtttttcaaaaagctggtgctt-ctacat--tttacttaacagtt--tgcaatttaaacag-----------------------------------------
|||  ||||||  ||||| ||| | ||||| || |||||| |||| ||||||||||| ||    ||||  ||||| |||||||||||||||||||| |||||| |     | |    | |  ||  |  |||| |  ||| ||||||  | |  ||     ||  | |||  |  | |                                          
ATTCATTTTGAGATTTTCGGCAATAGAGATATACAATGAAGCTGTGAGGGACCTCCTGAGCCACGACACCACACCCCTCAGACTTCTTGATGATCCGGAGgtacac----tcactgttctccttttactagcttgaacttactacataatctgtttgtgttttcctccaacctgtatactgttctcgagttgttcatgtttccatttgatttcaaaacag

upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g35890.1 (Oryza sativa), 5'ss of exon 5
ATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGgtaaa---tatctttatcagtgttt----------ttcaa-aaagctggtgc------ttctacattttacttaacagtttgcaatttaaacag
 ||  |  ||||||| || ||| ||||||| || || ||  |||||||||||||||| ||   ||||   || |||||||| |||||||||||||||||||| |    | || ||  ||  ||||          ||||| |||  |  |||      |   ||||||| ||   |  | || |||  ||||||
GTTCATCCTGAAGTTCTCGGCAATGGAGATATACAACGAGGCTGTCAGGGACCTCCTGAGCTCTGACGCAACGCCTCTCAGGCTTCTTGATGATCCAGAGgttacctttttccttgacatggtttgctgattaccttcaacaaaaatcctgcaaaatttatcacattttgctgttctttctg-aatgcaaacag

upper sequence: GLYMA02G05650.1 (Glycine max), 5'ss of exon 4
lower sequence: AT3G51150.2 (Arabidopsis thaliana), 5'ss of exon 6
ATTTGTTTTGAAGTTTTCAGCATTGGAGATCTATAATGAATCTGTCAGGGACCTCCTTAGTGTTGACAGTACACCTCTCAGACTTCTTGATGATCCAGAGgtaaatatctttatcagtgtttttcaaaaagctggtgcttctacattttacttaacagtttgc--aatttaa-acag
|||  || ||||||| |||||  |||||||||||||||| ||||| || |||||| | |||   |||| ||  || |||||| |||| |||||||| ||||||||  |    |   |  | ||  |   |  ||||     || || | |||| || | |     | |||   ||||
ATTCATTCTGAAGTTCTCAGCCATGGAGATCTATAATGAGTCTGTAAGAGACCTCTTGAGTACAGACATTAGTCCACTCAGAGTTCTAGATGATCCTGAGgtaaaagttgggactggcatctt--atggaattggtatgcata-atctcactttactggtcatttactttgggacag