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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCTTTTCAATTTGTATGGGCCCCGAGCTGGAGGTGATGACACAGAAAGGATTCAGTTTAAACAAAAATTTTACAGGATATTACAGgtatttgaaatgtttatatgttaatagaatcagtgaatgatgactaaatccaaaagtcattgctttgcagaattttttccatgcttcaaacggtggcttt...

Basic information

species Glycine max
transcript GLYMA02G05430.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05430.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g03440.t01 (Vitis vinifera), 5'ss of exon 4
TTCTTTTCAATTTGTATGGGCCCCGAGCTGGAGGTGATGACACAGAAAGGATTCAGTTTAAACAAAAATTTTACAGGATATTACAGgtatttgaaatgtttatatgttaatagaatcagtgaatgatgactaaatccaaaagtcat-tgctttgcagaatttt--ttccatgcttcaaacggtggcttt
||||||||||| | ||||||||||||||||    ||| || |||||||||||||||||||| || |  |||| |  |||||||||||||    ||   | |   |  || | ||   | ||   | |||   |||   | |||  | | || || | ||| ||  ||    |  | |     ||   ||
TTCTTTTCAATATATATGGGCCCCGAGCTGACTCTGAGGATACAGAAAGGATTCAGTTTAAGCACACTTTTTTCCAGATATTACAGgtagcctaatattcttcctcatatttgagataatgggcggtga---aatttgagagttttattctgtgtaaaatcttgtttttgggtgttattatttgtactt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207680791|gb|GD663232.1|GD663232
EST:     GTTTAAAACTAAAAATTTTACAGGATATTACAG                         A
genomic: GTTT-AAAC-AAAAATTTTACAGGATATTACAGgtatttgaaa ... tctttaatag-
EST: gi|207680791|gb|GD663232.1|GD663232
EST:     GTTTAAAACTAAAAATTTTACAGGATATTACAG                         A
genomic: GTTT-AAAC-AAAAATTTTACAGGATATTACAGgtatttgaaa ... tctttaatag-