1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataactgtttcttctgtgttatttgaaattgttttgtccgtcaggactatattgcctctaattatctcgtttaattccttttag
species | Glycine max |
transcript | GLYMA02G05250.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGG TCCTGTTAAGCATGAGAAGAAA-TGTTGGAGATGATTGGGAGAAAATTGAAEST: gi|207758804|gb|GD730727.1|GD730727
genomic: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataa ... ttccttttagTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAA
EST: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGG TCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTG-AEST: gi|208207063|gb|GE003722.1|GE003722
genomic: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataa ... ttccttttagTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAA
EST: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGG TCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAAEST: gi|207830248|gb|GD804656.1|GD804656
genomic: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataa ... ttccttttagTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAA
EST: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGG TCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAA
genomic: CATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataa ... ttccttttagTCCTGTTAAGCATGAGAAGAAAATGTTGGAGATGATTGGGAGAAAATTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGAGATGAATCTAGCTGCTGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAGAACAAGAAGCAGCAGCAAAGGATTATTGTCTTTGCTGGAGGgtgtgaataactgtttcttctgtgttatttgaaattgttttgtccgtcaggactatattgcctctaattatctcgtttaattccttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG