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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGgtaaatcaatttctacctaattttttaatgtttgatattatgatactgtgcatttgttaattgcttcttttagcacattaatttataatactactattaa...

Basic information

species Glycine max
transcript GLYMA02G05160.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM5G846811_T01 (Zea mays), 5'ss of exon 4
TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGgtaaatcaatttctacctaattttttaatgtttgatattatgatactgtgcatttgttaattgcttcttttagcacattaatttataatactactattaa
||||| || ||  |||| ||||||||||||| ||| || |||||| | || |||||||||||||||||      |||   |    ||||| |  |   |  ||  |    ||   | ||| | ||      || |   | || |||| ||   |||     | |
TGGATACCTGAACTGAAGCATTATGCACCTGGTGTGCCAATTATTCTCGTAGGGACAAAGCTTGgtaagaatgattcggtccttctttttgaaatccaaccttcggtgcttgcaaaattgattatgctagtttctgatagatcaattgattggactttcggtta

upper sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 5
TGGATTCCAGAGTTGAAACATTATGCACCTGATGTTCCCATTATTTTGGTTGGGACAAAGCTTGgtaaatcaatttctacctaattttttaatgtttgatattatgata--ctgtgcatttgttaattgcttcttttagcacattaatttataatactactattaa-
||||||||||| ||||| ||||||||||||| |||||| ||  || | ||||| || ||||||||| |    |||||     |  ||| |  |   |  | |||   ||  ||    |  || |  || ||| | ||     |     ||  |   | |     || 
TGGATTCCAGAATTGAAGCATTATGCACCTGGTGTTCCGATAGTTCTTGTTGGCACTAAGCTTGgtta---gatttcctttcagctttatggttcctcttcttactgtagactccatagctgctcttttcttatgttcatgaagatggtttcagatccatgtccaac