Sequence
atgc intronic sequence ATGC exonic sequenceAGAACTTGTGGCACTTAAGAATATCTTTGAGAAGAAATATGGGAAAGATTTTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAGgtaagcctttttctgactgcaatttagcttgtatttgcttacaaagaagcagccttttggatttttggattttgatgcttgattgtcagtaaactacttaatttctattaatcctcaagtattcatactagtgttgtgaatggccatgaatttttag
Basic information
species | Glycine max |
transcript | GLYMA02G04900.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G04900.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G35730.1 (Arabidopsis thaliana), 5'ss of exon 4
AGAACTTGTGGCACTTAAGAATATCTTTGAGAAGAAATATGGGAAAGATTTTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAGgtaagcctttttctgactgcaatttagcttgtatttgcttacaaagaagcagccttttggatttttggattttgatgcttgattgtcagtaaactacttaatttctattaatcctcaagtattcatactagtgttgtgaatggccatgaatttttag
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TGAGCTTGGAGATCTTAGAGACATCTTTGCGAAGAAATATGGGAAAGATTTTGTATCTGCTGCTACTGATTTGCGTCCTAGCTGCGGTGTTAACCGGATGgtaa--------ctaaat-cattcatgtttctgattagtctaacttgaactgtgattcg--tttttagat------gcaagatga--aatcga--acttgttttcttct--ttcttgtgcgtttgtag-----------------------------
upper sequence: GLYMA02G04900.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv00s0302g00010.t01 (Vitis vinifera), 5'ss of exon 2
AGAACTTGTGGCACTTAAGAATATCTTTGAGAAGAAATATGGGAAAGATTTTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAGgtaagcctttttctgactgcaatttagcttgtatttgct-tacaaagaagcagccttttggatttttggattttgatgcttgattgtcagtaaact--acttaatttctattaatcctcaagtattcatactagtgttgtgaatggccatgaatttttag
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AGAGCTATTGGCAATTCGGGATAATTTTGAGAAGAAATATGGGAAAGATTTTGTGTCTGCAGCTACTGATTTACGACCTAGCTGTGGTGTAAATCGCATGgtaagactcgt-cagcctaccatt--gcaaacattgcttgtacgataaattgattctttcacaagtggccttcttatttcgagctcttagtagttttcacctg---------------------------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|26268960|gb|CA820023.1|CA820023EST: TTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAG TTGATCGAAAAGCTCTCAGTACGAACACCACCTGGTGAAGTAAAATTGAAA
genomic: TTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAGgtaagccttt ... gaatttttagTTGATCGAAAAGCTCTCAGTACGAACACCACCTGGTGAAGTAAAATTGAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGAACTTGTGGCACTTAAGAATATCTTTGAGAAGAAATATGGGAAAGATTTTGTATCTGCAGCTGTTGATCTAAGACCTAGCTGCGGTGTAAATCGCCAGgtaagcctttttctgactgcaatttagcttgtatttgcttacaaagaagcagccttttggatttttggattttgatgcttgattgtcagtaaactacttaatttctattaatcctcaagtattcatactagtgttgtgaatggccatgaatttttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC