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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag

Basic information

species Glycine max
transcript GLYMA02G03540.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv13s0019g02210.t01 (Vitis vinifera), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagg-gttttgcaatattgtcaag
|| |||| ||||||||  | ||||||||| | ||||| ||||| || || ||  | || ||||||||| |||||||||||||||||||| | ||||||||||||||  |  ||  ||  ||  |   || | || |    | || ||| |  |    ||  |||||| ||      ||  | |  ||
TACTCTTCTACTTCATCCTAGAGGACTTTGTTTTCTATTGGGGGCACAGGATTTTACATACAAAATGGTTATACAAGCATGTGCACAGTATCCATCATGAgtaagtgaaaatggttgacataagtaattggtttgt----tattcattcttca-gtgctcttataggtgtaactggatgatatatag

upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S130_70V6.1 (Physcomitrella patens), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagt--tcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag--------------
|| | | ||| || || || || || || || || || ||||| ||  | || |||||||| || ||||| |||||||| |||||||| |||||||||||||  ||  ||  |  | ||   | | |||  |  ||  |   |  |  || ||  | |  | ||| | |  ||   | ||||  |  |              
TACTATCTTATTTTATCTTAGAAGATTTCATCTTTTATTGGGGGCACCGTATTCTGCACACCAAGTGGCTCTACAAGCACGTGCACAGCGTTCATCATGAgtgtgtgctctctactctgaattcgaattcgaatttcaaagctagtagttgtc--tggtgtcctacatgtgttctaattattcacctgcccttcgttatcag

upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ22305 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| || ||||| ||||||||||| ||| ||||||||||||||||||||   |  |  | | |  || ||   |  |   | |   | || |  ||||                              
TCCTCTCCTACTTCATCCTTGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCATGAgtaagtttgctcctccggtttttgactt--accatctcttttcctgttcttgatag------------------------------

upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ25588 (Selaginella moellendorffii), 5'ss of exon 3
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag
|  |||  ||||||||  | ||||||||||| ||||||||||| ||  || | || ||||| || ||||| ||||||||||| ||| |||||||||| |||||||||   |  |    | |  || ||   |  |   | |   | || |  ||||                              
TCCTCTCCTACTTCATCCTCGAGGACTTTATCTTCTACTGGGGCCACCGAGTTCTTCACACCAAGTGGCTGTACAAGCATGTCCACTGTGTTCATCACGAgtaagtttgctccttcagtttttgactt--accatctcttttcctgttcttgatag------------------------------

upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ20610 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag
|  | |  ||||||||| | || ||||| || ||||||||||| ||| |  | |||||||| |||||||| || ||||| || ||||| |||||||| |||| |||    |||| |    |    ||| ||   | |  ||| |    ||   | | ||  || ||                    
TTGTTTCGTACTTCATTCTCGAAGACTTCATCTTCTACTGGGGCCATCGGGTCCTGCACACGAAATGGCTTTATAAGCACGTTCACAGCGTTCATCACGAgtgagtgaccttgtttctcgt---ctttcaggcatgacaatggta--catttctgggct--tacag--------------------

upper sequence: GLYMA02G03540.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ28675 (Selaginella moellendorffii), 5'ss of exon 4
TAATCTTTTACTTCATTTTGGAGGACTTTATATTCTACTGGGGACATAGAATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcatttgtgtgctatgggattttagcttttattatgtttattatcaatagactactatagggttttgcaatattgtcaag
|  | |  ||||||||| | || ||||| || ||||||||||| ||| |  | |||||||| |||||||| || ||||| || ||||| |||||||| ||||||||    |||| |    |    ||| |    | |  ||| |    ||   | | ||  || ||                    
TTGTTTCGTACTTCATTCTCGAAGACTTCATCTTCTACTGGGGCCATCGGGTCCTGCACACGAAATGGCTTTATAAGCACGTTCACAGCGTTCATCACGAgtaagtgacattgtttctcct---ctttcaagcgtgacaatggtg--catttctgggct--tacag--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|27424911|gb|CA936431.1|CA936431
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|151413053|gb|EV282861.1|EV282861
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|9439936|gb|BE440448.1|BE440448
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|19269205|gb|BM885461.1|BM885461
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCG
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCG
EST: gi|192295602|gb|FG988176.1|FG988176
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
EST: gi|192320535|gb|FK011945.1|FK011945
EST:     ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGA                         GTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT
genomic: ATACTGCACACAAAATGGCTATACAAGCATGTGCACAGTGTTCATCATGAgtaagttcat ... tattgtcaagGTATGCTACACCGTTTGGTCTTACTTCTGAATATGCTCATCCTGCTGAGAT