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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcatacaatttcttattagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag

Basic information

species Glycine max
transcript GLYMA02G03080.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g13720.1 (Oryza sativa), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcac-------actagtccccagcatacaatttcttatt---agtttacttt---tttgagaaatttgttttaatatttttttcttggctgatataattgtag
|||||||| |||||||| ||||||||||| |||||||||||||| ||||| || ||||| ||||| ||  | ||||||||| | ||  | ||||||||  |  |         |  | |   |||   | | |    | |   |  ||| |||       ||| |||  || | |     || | |  | |    ||     ||
ATTCTTGAGATGGACACCTACAGATACCACGGACACTCTATGTCAGATCCAGGGAGCACTTACCGCACCAGAGATGAAATTGCAGGCATAAGACAGgtcaggaatcaggatggccggccatgagctctcgagtctcgactcaaaacttaatttacaccgaagacattcattctgagtaagttgtttgtgttatgttaccaacag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os02g50620.1 (Oryza sativa), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcatacaatttcttattagt-ttacttttttgagaaatttgttttaatatttttttcttg-gctgatataattgtag
 ||||||||||||| || ||||| |||||||| || |||||||| ||||| || ||||| ||||| ||  | ||||| || || ||||| ||||||||  |   |    | |||    ||      | | ||||     |  | ||||     |||     | |||| |||| |   ||  | |         
GTTCTTGAAATGGATACCTACAGGTACCATGGCCATTCTATGTCAGATCCCGGAAGCACTTACCGTACCAGGGATGAGATCTCAGGTGTAAGACAGgtgaggatcctgtgacccttaaatttgtggtgtaattaacgccagatgtttggtt--tttaacgaattattgttttatcatgccaacag--------

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G361693_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttg-tcacactagtccc-cagcatacaatttcttat-tagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag
 | ||||| ||||| || |||||||||||||| ||||||||||| ||||| || ||||| ||||| ||  | ||||| ||||| ||||| || |||||  | |     |  ||   ||| ||  |||||      |  | | | | ||| |   | |||| |||  || |  |                     
GTCCTTGAGATGGATACCTACAGATACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtaaggttgttttgatctttcagtatggaatttaaagcatgctatgcgtgtttcaattaattgtgttacaatatcatcag------------------

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G140150_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttg-tcacactagtccc-cagcatacaatttc--ttattagtttacttttttgagaaatt-tgttttaatatttttttcttggctgatataattgtag
 | ||||| ||||| || ||||| |||||||| ||||||||||| ||||| || ||||| ||||| ||  | ||||| ||||| ||||| || ||||| || |     || ||   |||  |  |||||   | || |  | | | ||   |  |||| ||||  |||||  |                       
GTCCTTGAGATGGATACCTACAGGTACCATGGCCACTCTATGTCAGATCCAGGAAGCACTTACCGCACCAGGGATGAGATTTCAGGTGTCAGGCAGgtatgattgttttaatctttcagtttggaatttaaatcatgatataagtgttacaattaattctgttacaatatcatcag--------------------

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G027627_T01 (Zea mays), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttg--tcacactagtccccagcatacaatttcttattagtttacttttttgagaaatttgttttaat----atttttttcttggctgatataattgtag-------
|| ||||| |||||||| ||||||||||| || ||||| ||||| ||||| || ||||| ||||| ||| | ||||| ||  ||||  | || |||||  |  |  || | ||| |  |||    |    |   |   | |     |  | || ||| ||||  |    | |  | | |  |   |   |||| |         
ATCCTTGAGATGGACACCTACAGATACCACGGGCACTCAATGTCAGATCCAGGTAGCACCTACCGCACAAGGGATGAGATCGCTGGCATAAGGCAGgtcaggatggcagttgtctc-ggcacttgagaaatgtgttcctcaggggatgaacaatttttttttctttctgaatgatctgtctgtctacggaattatgacacacag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G59900.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtc-cccagcatacaatttcttattag----tttacttttttgagaaattt-----gttttaatatttttttcttggctgatataattgtag
|||||||| |||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||||| || || ||||| || ||||||||||| |||||| || |  ||  |  ||    | |  |||||||  | |     | |  | ||   ||||| |     ||   || |||| | |  |     |||| | |  ||
ATTCTTGAGATGGACACATACAGGTACCACGGTCACTCCATGTCTGATCCTGGGAGCACATACCGTACCCGAGATGAGATATCTGGTGTGAGGCAGgttcgttagtctctttacctgaaaaatcatttcttggtcgaggactcagctattgatgaaatctcaaaagtcaaaacatttatgtgctactctatatgact-cag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G24180.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcat-acaatttctt-attagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag
|| ||||| |||||||||||||||||||| || |||||||||||||| || || ||||| ||||| || ||||||||||| ||||| |||||||||||| ||  |  |  ||    | |  || | | ||  |    | | |  ||| || |  |||   |   ||   ||||| | | || ||   ||    
ATCCTTGAGATGGACACTTACAGATACCACGGTCACTCTATGTCTGACCCAGGAAGCACTTACCGTACTCGTGATGAAATCTCTGGCGTGAGACAGgttagtt-ctttgttcatttgtaagactactgctccaaccatatgcaattt-gaaactttttaatctgtaaagttttcatcggtgttacctttag--

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g00990.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcatacaatttcttatt----agtttact-----tttttgagaaatttgttttaatatttttttcttggctgatataattg-tag
|||||||||||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||| | |   |   |       |||    ||  ||  |    ||  |  |     |||   |||| ||   |  | ||  | ||| |  | || |||  ||  |||
ATTCTTGAAATGGACACTTATAGGTACCATGGTCACTCCATGTCTGATCCTGGGAGCACCTACCGTACACGTGATGAGATTTCTGGTGTGAGACAGgtgtatatgatatgatattgacatttttttgtttgctgcaaagcgtgttatcaatttcctagaagttccatgcattaaatattttt--ggtggtatgttttctag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv09s0018g01940.t01 (Vitis vinifera), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacacta-gtccccagcatacaatttcttattagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag---------
|||||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||||| || |||||||| |||||||||||||||||||| | | |  ||| |  |    |||    ||  ||  |    |  | | |||| || ||  |   | | |  | |  |     | | |  | | |          
ATTCTTGAAATGGACACTTATAGGTACCATGGTCACTCCATGTCTGATCCTGGGAGTACATACCGTACGCGTGATGAGATTTCTGGTGTGAGACAGgtgtat-atgctatgatcttgacatttttttgtttgctgcagtg-tgtgttgacaatttcctggaagtttcatgtattaaatagttttggtggcatgttttctag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S201_84V6.1 (Physcomitrella patens), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcatacaatttct-tattagtttacttttttgagaaatttgttttaatatttttttcttggctgatataattgtag-----------------------------------
 || | || ||||| || |||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||||| || ||||||||  ||||||| ||  |  ||| ||   ||   ||  |  ||  |||       ||||  |  |     || || ||  |||   ||  | || |   |                                         
GTTTTGGAGATGGATACGTACAGATATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTACCGAACCCGTGATGAGATCTCTGGTGTACGACAGgtgtg--attctaatca--agttgacgttcactgcattgaaactgttttcggttaggagggtattgattgtttgccctgagttgctgagacccagatttattttcttacacttttttgctgatgtatacag

upper sequence: GLYMA02G03080.1 (Glycine max), 5'ss of exon 4
lower sequence: PP1S56_222V6.1 (Physcomitrella patens), 5'ss of exon 4
ATTCTTGAAATGGACACTTACAGATACCATGGACACTCTATGTCTGATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcacactagtccccagcatacaatttcttattagtt----------tacttt---tttgagaaatttgttttaatattttttt---cttg-gctgatataattgtag----------------------------------------
 || | || ||||||||||| || || ||||| |||||||||||||| || |||||||| || || || ||||| || || || |||||  ||||||| ||   |   | |||      |  || ||  | |  | |          | ||||   ||  |  || | |||    | ||||||    |||| ||||| || |    |                                         
GTTTTGGAGATGGACACTTATAGGTATCATGGTCACTCTATGTCTGACCCAGGCAGCACCTATCGAACTCGTGACGAGATCTCCGGTGTCCGACAGgtgtgcttc--cactccatgttgtgaaagtttctgtgcgctgcgttggggttgctttcagttcaaagaactcgttgatttcttttttgtgacttgtgctgaaatgaccagaccaaggttcacttatgtaatcccttattcttatgcgtatag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51338002|gb|CO981868.1|CO981868
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|254322999|gb|GR839912.1|GR839912
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|15664218|gb|BI701589.1|BI701589
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|58016185|gb|CX702927.1|CX702927
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|15199292|gb|BI423757.1|BI423757
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|58019317|gb|CX706059.1|CX706059
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|151406023|gb|EV275838.1|EV275838
EST:     ATCCTGGCAGCACATACCGGACGCGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|19054086|gb|BM732753.1|BM732753
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|27427278|gb|CA938798.1|CA938798
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
EST: gi|58016174|gb|CX702916.1|CX702916
EST:     ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAG                         GAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT
genomic: ATCCTGGCAGCACATACCGGACACGTGATGAAATTTCTGGTGTGAGACAGgtttgtcaca ... ataattgtagGAGCGTGATCCAATTGAGAGAGTAAGAAAGCTGGTATTGTCTCATGATATT