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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgtttttaaatgattattgcaagcacttgcaattatgaattatttgatatgcagaacattttttatgcaaagtatgatgatctttttgagttaga...

Basic information

species Glycine max
transcript GLYMA02G02990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os06g37660.1 (Oryza sativa), 5'ss of exon 4
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtg-tttttaaatgattattgcaagcacttg---caattatgaattatttgatatgcagaacattttttatgcaaagtatgatgatctttttgagttaga
 | || ||  | ||||| |||||||| || || ||||||||| | ||||| || |||||| | ||||||||||||||||| ||      || |   ||   |   |||   ||    ||||||| || ||||   |  ||     |||  |   ||       ||  ||  |  |       
GTCTTTTGCCTCCATGGCGGTCTCTCGCCGTCATTGGATACATTGGATAACATTCGTGCCCTCGATCGCATACAGGAGgtatgcaacacttcacccatacctttgagctagtgatctaattatgcatcattttgcac-catcgtctttacttgccatgtctccatagtccataggcacc---

upper sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G69960.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgtttttaaatgattattgcaagcacttgcaattatgaattatttgatatgcagaacattttttatgcaaagtatgatgatctttttgagttaga
 |||||||||| |||||||| || ||||| ||||| ||||||||||| || |||||  | || ||||| || || |||||| || |    ||   |      |||     ||||        ||| ||||| |        ||   ||   | | || |||| |  | |||  |    
GTTTTCTGTTTACATGGAGGACTTTCACCTTCTTTAGATACACTTGACAACATCCGATCTTTAGATCGAATTCAAGAGgttagt-tccagaatccaaaccaacaaaaggatgcacc------ttacttgatgt--------ttacataacgagactaagatgtttgtgttgcctctag

upper sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G59830.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgt-ttgtgtt---tttaaatg-attatt--gca---agcacttgcaattatgaattatttgatatgcagaacattttttatgcaaagtatgatgatctttttgagttaga-------------------------------------------------------------------------------
 ||||||||||||||||||| || ||||| ||| ||||||| ||||| ||||||||   ||||||||| ||||| ||||| |||| ||   | || | | ||| ||  |||   || |  || || | |    | |||       |  ||||| ||| |     |    || | || | |||     |                                                                               
GTTTTCTGTTTGCATGGAGGCCTTTCACCTTCTCTGGATACTCTTGACAATATCCGAAGCTTGGATCGAATACAAGAGgtattgttttgggtatagaagcattgttttgcatttagtatctgtaaatgtctcctctttttccctaaagacattgtttctctctggct--ataaactctctgaaaccaacctcctagttattattagttttggcttcagatagaacaaggattgtaataatctgatatggtatgctctgggattgtag

upper sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G10430.1 (Arabidopsis thaliana), 5'ss of exon 4
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgtttttaaatgattattgcaagcacttgcaatta-tgaattatttgatatgcagaacattttttatgcaaagtatgatga-tctttttgagttaga------------------------------------------------------------------------------------
 ||||||||||||||||||| || ||||| ||| ||||||| ||||||||||||||   ||||||||| |||||||||||      || |   |   |  |  | ||  | |     | | | ||    ||  |      | ||  |    |  ||| |  ||  |||  || || || |                                                                                    
GTTTTCTGTTTGCATGGAGGGCTTTCACCTTCTCTGGATACTCTTGATAATATCCGAAGCTTGGATCGGATACAGGAGgt--aaccttcttgttctctgctaaaggccttagtgtggacttagttggaagagttatgagtccttcctgggtctcagtgtcttgtctctacttaagatacaattacaaagagcacaaacgtttggaattttttatgacatcttattgttcagctctttgaactatgtatgatgtgtgatctgtag

upper sequence: GLYMA02G02990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01080.t01 (Vitis vinifera), 5'ss of exon 4
ATTTTCTGTTTGCATGGAGGTCTCTCACCATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgtttttaaatgattattgcaagcacttg--caattatgaatt-----atttgatatgcagaac-attttttatgcaaagtatgatgatctttttgagttaga
 | ||||||||||||||||| || |||||||||||||||||| | |||||||| || | |||||| || ||||||||||| ||||        || ||| |  | |  ||||  || ||| ||  |     |||   | | ||  ||   ||| | |  |  | |  | | | | | |        
GTATTCTGTTTGCATGGAGGACTTTCACCATCTTTGGATACATTAGATAATATTCGAGGCTTGGACCGTATACAGGAGgtatgtgcacagttttggttagtttatgtgcttgaccatttaagatcttatgcattgatttttcatgactgatttctctctattgcaaaaagctttatct--------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33388375|gb|CA851582.1|CA851582
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|6566765|gb|AW234397.1|AW234397
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|8285799|gb|BE023358.1|BE023358
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|38191290|gb|CF920496.1|CF920496
EST:     TTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: TTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|15200413|gb|BI424337.1|BI424337
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|6134813|gb|AW133206.1|AW133206
EST:     TTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: TTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|21602307|gb|BQ612638.1|BQ612638
EST:     GATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: GATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|58019436|gb|CX706178.1|CX706178
EST:     CATCTTGGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|6134732|gb|AW133125.1|AW133125
EST:     TTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: TTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|6725380|gb|AW309779.1|AW309779
EST:     TTGGATCGCATACA-GAG                         GTTTCCACACGAAGGACCAATGTGTGACTTCTTGTGGTCTGATCCAGATGA
genomic: TTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagG-TTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGA
EST: gi|57574915|gb|CX547890.1|CX547890
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
EST: gi|193336457|gb|FK298945.1|FK298945
EST:     CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAG                         GTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT
genomic: CATCTTTGGATACACTTGATAATATCCGTGCCTTGGATCGCATACAGGAGgtttgtgttt ... tgcaatgtagGTTCCACACGAAGGACCAATGTGTGACCTCTTGTGGTCTGATCCAGATGAT