1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacacttcttctcgccataggttttttaattttgtcttgtaatttggcaacttagagtcttagactaatgggaatggaccattttgttatgcctttctcttattgcttacgttcag
species | Glycine max |
transcript | GLYMA02G02600.6 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: CTGTAGATTTTTAGGTTGGAACAGATACCGATACCTCGACTTTACATCTG ATAAGGGAAAGCATTAAAACAAGAACAACCAEST: gi|7283320|gb|AW595928.1|AW595928
genomic: CTGTAGATTTTTAGGT-GGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACA-GAACAACCA
EST: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAEST: gi|20813714|gb|BQ298192.1|BQ298192
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACA
EST: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG ATAAGGGAAAGCATTAAAACAGAACAACCATGCACAEST: gi|120529071|gb|EH257205.1|EH257205
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACA
EST: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTG ATAAGGGAAAGCATTAAAACAGAACAACCATGCACA
genomic: ACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacact ... ttacgttcagATAAGGGAAAGCATTAAAACAGAACAACCATGCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATGCAAAAAATGAAGTTTTGGGCCACAACTGTAGATTTTTAGGTGGAACAGATACCGATACCTCGACTTTACATCTGgtgatacacttcttctcgccataggttttttaattttgtcttgtaatttggcaacttagagtcttagactaatgggaatggaccattttgttatgcctttctcttattgcttacgttcag
- - - - - - - - - - - - - - - - - - - - - - GGTGGA