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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataagattgcatttccccctttttatcagtctaatattgtaccgattcag

Basic information

species Glycine max
transcript GLYMA02G02570.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g40590.1 (Oryza sativa), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtg-------tcaaaaactacaataagattgcatttccccctt----tttatcagtctaatatt--gtaccgattcag------
 ||||| || ||||||||||| ||||||||||||||||||||||||||| | ||||| || ||| ||||||| ||||||||||| ||  |  | || || ||| |         |  | ||  | || |   | | | |   |  ||    | || || ||| |||||   ||   |||||       
AGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGgtatgcaaccatgtttgagaatcaaaacatattagaaatgttcatttagattgtaacattctcatatttcttaaatattcattttcag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os09g19700.1 (Oryza sativa), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataagattgcatttccccctttttatcagtctaatattgtaccgattcag------------------
||| || ||||| || |||||||||||||| |||||||||||||| ||| ||||||| || ||  | ||||||||||| || || ||| | || ||||| |||||| | ||   ||  |||  |||| | | |  | |     |  | ||  || |||||    |  |                   
TGCTCTTGGAGCAGCAAAGGGTCTTGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTTATTTACCGTGATTTTAAAACATCTAATATACTGCTAGATGCTgtaagttttaagtccttgaattggattacgtattgcacaccacacgattcacatcttgtaattttgtatattatgctactcttgcag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G150806_T01 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataag-attgcatttcccccttttta--------tcagtctaatattgtaccgattcag---
|||||| ||||| || |||||||| ||||| |||||||||||||| ||| | ||||| || ||| | ||||||||||| || || ||| |||||||||| |||||| | |  ||    | || | | ||  | || |  | ||||        |   ||| || || ||  | ||      
TGCACTGGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGTCCAGTCATTTATCGTGATTTTAAAACATCTAATATACTACTGGATGCGgtaagt-taatgaataggattatgcagtgtgtgtctcattatttacatactgttgcatcttatgttatattgcttgtatag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G132184_T03 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagt-gtcaaaaactacaata-agattgcatttccccctttttatcagtcta------atattgtaccgattcag---
|||||| ||||| || |||||||| ||||| |||||||||||||| ||| ||||||| || ||| | ||||||||||| || || ||| | |||||||| ||||||     || |  |  ||  ||  ||   |||    | | |||    |||      || || ||  | ||      
TGCACTCGGAGCAGCAAAGGGTCTGGCTTTCCTTCATGAAGAAGCAGAAAGACCAGTCATTTATCGCGATTTTAAAACATCTAATATACTGCTGGATGCGgtaagttaatgaataggattatgcagtgtgtgcttcatgatctatatactgctacatcatatgttatattgcttgtacag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G028037_T02 (Zea mays), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataagattgcatttccccctttttatcagtctaatattgtaccgatt-cag
||| || || ||||| || || || |||||||||||||||||||||||| |||||||||| ||| |||| || ||||| || || ||  |  | ||||| |||||   | | |   | |     |    |||    | |    ||   | |  ||   ||    || |||
TGCTCTTGGTGCTGCGAAAGGCCTCGCTTTTCTTCATGAAGAAGCTGAAAGACCAGTAATCTATCGGGACTTCAAAACCTCCAATATTCTTTTAGATGCGgtaagcaactatattgaaatgttaaaaatattcattcatacaaatgtatttgctaacatatttttttcag

upper sequence: GLYMA02G02570.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01620.t01 (Vitis vinifera), 5'ss of exon 4
TGCACTAGGAGCTGCTAAGGGTCTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtcaaaaactacaataagattgcatttccccctttttatcagtcta--------atattgtaccgattcag
||||||||| ||||||||||||||||| ||||||||||| ||||| ||| | ||||| |||||| | |||||||| || || |||||  || ||||||||||||||   |||||||   ||||  |  | |||  | | |  ||||| || |        ||    | |   |||||
TGCACTAGGTGCTGCTAAGGGTCTTGCATTTCTTCATGAGGAAGCAGAAAGGCCAGTTATATATCGTGATTTTAAGACCTCCAACATCCTATTGGATGCAgtaagtaataaaaactgtgataaattcacgtttgtctcctaatatcattccatcttttatatgacatcctatttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208289630|gb|GE088513.1|GE088513
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGG
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGG
EST: gi|14125505|gb|BG789943.1|BG789943
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
EST: gi|208264289|gb|GE062603.1|GE062603
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGG
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGG
EST: gi|298181788|gb|HO025963.1|HO025963
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
EST: gi|192309781|gb|FK002935.1|FK002935
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
EST: gi|18040000|gb|BM308294.1|BM308294
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
EST: gi|16996487|gb|BM085859.1|BM085859
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
EST: gi|192298222|gb|FG992057.1|FG992057
EST:     GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCA                         GAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA
genomic: GACCAGTAATATATAGGGATTTTAAAACTTCAAACATATTACTGGATGCAgtaagtgtca ... accgattcagGAGTACAATGCCAAGCTCTCAGATTTTGGTCTTGCCAAAGATGGTCCAGAA