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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtaggaaactagaacttgccttcttgcctctctttctgagtcaacatgtgtagaaccctgcaatcacataatggaattgaaatagcaaccacttga...

Basic information

species Glycine max
transcript GLYMA02G02400.2
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G02400.2 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os05g08960.2 (Oryza sativa), 5'ss of exon 4
GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtaggaaacta-gaacttgccttcttgcctctctttctgagtcaacatgtgtagaaccctgcaatcacata-atggaattgaaatagcaaccacttga-
| || || ||| | ||||||||||| || || ||||||||||| || |||||||||||||| ||||||||||  ||||||||||| |||||||||       |   |   ||   | ||||||| |        ||     | | |   |   |  ||  |  ||  ||| |||     | |||     | | 
GTACGTTCAAGCTGACACTTCAGTTTACTGAAGATTATCCTAACAAGCCACCTACAGTGCGATTTGTTTCTCGGATGTTTCATCCTAACAgtaagcctctctccctgctgtttaatacttgcctgtggcat--ggttcctgtttcttacaagttataagtatttatgtggcatttcgg-aacaatagtctaac

upper sequence: GLYMA02G02400.2 (Glycine max), 5'ss of exon 4
lower sequence: Vv01s0026g01770.t01 (Vitis vinifera), 5'ss of exon 5
GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtaggaaactagaacttgccttcttgcctctctttctgagtcaacatgtgtagaaccctgcaatcacataatggaattg-aaatagcaaccacttga
| || ||||| || || |||||||| || ||||||||||| ||||| ||||| || || ||||||||||||  |||||| ||||| || ||||||| |||  | ||||||     | || ||    | ||    ||||       ||  | | || | || ||     |  || |||||   | |     |
GTACGTTTAAATTGACGCTTCAGTTTACAGAGGATTATCCGAATAAGCCACCAACTGTACGCTTTGTTTCTAGAATGTTCCATCCAAATAgtaagttggacgcaagaact-atgcttttacccaattctcactttcaattatgagagttctcagccaacatatgcctaatgtgcaaatatgtaacgtgcca

upper sequence: GLYMA02G02400.2 (Glycine max), 5'ss of exon 4
lower sequence: PP1S219_106V6.1 (Physcomitrella patens), 5'ss of exon 3
GCACATTTAAGTTAACACTTCAGTTCACCGAGGATTATCCTAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtaggaa--actagaacttgccttcttg---cctctctttctgagtcaacatgtgtagaaccctgcaatcacataatggaattgaaatagcaaccacttga
| || || ||||| ||  | || || |||||||||||||| || || || ||||||||||| ||||| ||  | |||||||| || |||||||||         |  | |||||    |  |    |     |  ||| |    | |  | |     |  ||          | ||||  ||   | |       
GGACGTTCAAGTTGACGTTGCAATTTACCGAGGATTATCCGAACAAGCCTCCTACAGTGCGTTTTGTCTCGAAGATGTTTCACCCTAACAgtaagcgttttccgcatgcacttgtacacgaggggtcaaggatgttgattggttagggttggggtggtcgaaggtggagggtggattgggattttagctg-----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298178672|gb|HO024407.1|HO024407
EST:     TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
genomic: TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
EST: gi|7691049|gb|AW759183.1|AW759183
EST:     TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
genomic: TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
EST: gi|298164392|gb|HO014037.1|HO014037
EST:     TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
genomic: TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
EST: gi|298180824|gb|HO022263.1|HO022263
EST:     TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACA                         TTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC
genomic: TAATAAACCACCTACAGTGCGCTTTGTTTCTCAAATGTTTCATCCCAACAgtaagtagga ... tcaattttagTTTATGCAGATGGAAGCATATGTTTGGACATTTTACAAAATCAATGGAGCC