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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttcaacttgttcagtttagttagatgagacataatcattactcaaagtctttggtgaataatatggtag

Basic information

species Glycine max
transcript GLYMA02G01990.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 4
lower sequence: AT1G02800.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgt--aaagtttcaacttgttcagtttagttagatga-gacataatcattactcaaagtctttggtgaataatatggtag--------------------------------
|||||    ||||| || || ||||| ||| |||||||    |   ||   ||  | || || || |||||||| ||||||||||||||||||||  ||  ||| ||  | || |  || | |  ||    |  |||    ||     | |||  |   || ||  ||  |                                 
GTTTTTACATTTGCGGACAAATACAGAGGACCCTACAGTGCAGGTCTGGCCCCAGAAGTTTGTCCATTCTACTGTTCTTACTCTGGATATCAGgttcaacattttaaacttttgaagttggatctatattaatttaaagtgtaactgtaatctcggaaaaaaaaactgaaattgaagtcatgtttttggttttggtttgttcag

upper sequence: GLYMA02G01990.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g00740.t01 (Vitis vinifera), 5'ss of exon 4
GTTTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttcaactt--gttcagtttagttagatgagacataatcattactcaaagtc--tttggtgaataatatggtag--------------------------------------
|| || ||||||||||| | |||||| ||| | ||||||||||  ||||||   ||||||||||||||||| |||||||| ||||| |||||||||| | |    |||  |  |  |  | ||||  |       || |  | | |  | |  ||   | |||    |   |                                       
GTGTTTCAGTTTGCTGACAGGTACAGAGGAGCATACAGCAATGGATTGAAAAACTATGTGTGCCCCTTCTATTGCTCTTATTCTGGTTATCAGgtaaggctatggcttcagccccttgcatttaggggcatttctataagcatttaggggcatttctataaatggattatgaacttgaaagtttttttcttggtgttttacattattgaag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19345934|gb|BM890814.1|BM890814
EST:     CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG                         GATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCA
genomic: CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttc ... aatatggtagGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCA
EST: gi|193640162|gb|FK592715.1|FK592715
EST:     CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG                         GATGAGCTGTTGTGGGGT
genomic: CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttc ... aatatggtagGATGAGCTGTTGTGGGGT
EST: gi|193719953|gb|FK650449.1|FK650449
EST:     TGTAAACCTTAATAGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG                         GATGAGCTGTTGTGGGGT
genomic: TG-AAACCTTA-T-GTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttc ... aatatggtagGATGAGCTGTTGTGGGGT
EST: gi|208058996|gb|GD859000.1|GD859000
EST:     CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAG                         GATGAGCTGTTG
genomic: CCTTGAAACCTTATGTGTGCCCCTTCTACTGCTCTTACTCTGGATATCAGgtaaagtttc ... aatatggtagGATGAGCTGTTG