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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagcaatcatgcatgtttctttattctggcccatcatcatttcaatattgtgttcccgcattggtgatatgagttgtgagtcttctgtggaagtggtatatgactgacatactttttacctttgtcgaagagtag

Basic information

species Glycine max
transcript GLYMA02G01610.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagcaatcatgcatgtttctttat---tctggcccatcatcatttcaatattgtgttcccgcattggtgatatgagttgtgagtcttctgtggaagtggtatatgactgacatactttttacctttgtcgaagagtag
 || || || |  |||||  | |||||||||||||| || || || || || ||||| ||||||||||| |||||| |||||||||||||||||||||||||||   |  | ||||   || |   ||||   ||||     |  |||  | |  ||| |          ||    ||       | | | || || | ||| |                                        
AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtatgtaatgagtcatttttgctagcttatatatctgctgtgttgtcacctgatcattatagcaataatatgaatttactcaaattaatttttgtgagaaagagcag-------------------------------------

upper sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 4
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagcaatcatgcatgtttctttattctggcccatcatcatttcaatattgtgttcccgcattggtgatatgagttgtgagtcttctgtggaagtggtatatgactgacatactttttacctttgtcgaagagtag
||| || || ||||||||  | || || || ||||| ||||| ||||| || ||||| |||||| ||||||| ||  | ||||||||||| ||||||||||||||| |    | |    |   | | || | | ||   |  || |     || ||   |  |   || || |   |||   |||  |||||  |  | || |  |||                                 
TGTTCAATCTAGAAGTGATGGGGTTAATACCTCTCTTTTTGAGAAAAGAGAACATATAGAGAAATTGCATCGAACACGAAATCTTCTTCGGAAAGTTCAGgtattaaaat--ttactagtcaatgtgtagtgttgctatttctcgt----gtagtggaatgacatctttgtaa---gagcattga--cttcta-gagattgatcaatgtgca-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151410275|gb|EV280090.1|EV280090
EST:     AGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAG                         TTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCC
genomic: AGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagc ... cgaagagtagTTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCC
EST: gi|213589560|gb|DB965804.1|DB965804
EST:     AGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAG                         TTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCC
genomic: AGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagc ... cgaagagtagTTCATATATGATCTCCCCGATAGACTAGGCAAGTGCATCAAGTCGGAGGCC