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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACAATAAGCTACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagccccttgtatattatttagtgtgcatcttttaattgtatggtagtgatgctttgcagtatattgatgtttactttgtcttttgcctttattatgtag

Basic information

species Glycine max
transcript GLYMA02G01220.3
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193637987|gb|FK586223.1|FK586223
EST:     ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|120532325|gb|EH260458.1|EH260458
EST:     ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|207819740|gb|GD790444.1|GD790444
EST:     ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|193551204|gb|FK507989.1|FK507989
EST:     ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAG-TTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|193379170|gb|FK343944.1|FK343944
EST:     CTGAGCGAGTTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: CTGAGCGAG-TTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|207809238|gb|GD782208.1|GD782208
EST:     GGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: GGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
EST: gi|4396096|gb|AI495093.1|AI495093
EST:     ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAG                         GCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA
genomic: ACATGGCTGAGCGAGTTGTTGGAAATGGATCATTTGGTGTAGTTTTCCAGgttagcccct ... tattatgtagGCAAAGTGCTTGGAGACAGGGGAAACTGTGGCTATAAAGAAGGTTCTTCAA