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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctttcttttttgttattcttgttaacctctaaccgaccttctattatcatgtgttacttttggacccagtgatattctg...

Basic information

species Glycine max
transcript GLYMA02G01000.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 3
---------------GTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctttcttttttgttattcttgttaacctctaaccgaccttctattatcatgtgttacttttggacccagtgatattctg----
               |||||||||||||| ||||| || ||||||||||| |||||||||||  |||||||||| ||||||||||||  |   ||    || |    ||  |    | | |  | | | |  ||  |  | ||     ||||| | ||  |||||    |||   | || |        
GATCATGAGGAATCTGTTGAAGAGTTTGTGCGTCGTAATCTTGGTGATGAGGTTTTTGAACGCCTGATAGAGCCATTTTGTTCAGgt--gctaatcagtttttgatgttcttagcctatca--cgtatcatgctgcattctactgggaattataaagttatacttaaatacctgctaatttatcatatt

upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ23527 (Selaginella moellendorffii), 5'ss of exon 3
---------------GTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctttcttttttgttattcttgttaacctctaaccgaccttctattatcatgtgttacttttggacccagtgatattctg
               || ||  ||||||||||||||||||| |||||||| || |||||  |  |||| || ||||| |||||||||  ||| | |   |  || || |   ||||        | |||    |  |                                                
GGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAGgt--gagtactatttgattggcgtagattttcc---ccttagttggatttcag-----------------------------------------------

upper sequence: GLYMA02G01000.1 (Glycine max), 5'ss of exon 4
lower sequence: EFJ34803 (Selaginella moellendorffii), 5'ss of exon 2
------------------------------GTTGAAGAGTTTGTTCGTCGGAACCTTGGTGATGATGTTTTTGAACGATTGATAGAGCCTTTTTGTTCAGgttggagcattgacttgtttgctttcttttttgttattcttgttaacctctaaccgaccttctattatcatgtgttacttttggacccagtgatattctg
                              || ||  ||||||||||||||||||| |||||||| || |||||  |  |||| || ||||| |||||||||  ||| | | | ||| |||   |   |||  |  |  | |||    |  |                                                
TTTCTGTTCGTGCAGGGTGGTGAAGAATCCGTAGAGCAGTTTGTTCGTCGGAACCTAGGTGATGAAGTCTTTGAGAGGCTGATCGAACCTTTCTGTTCAGgt--gagtact-atttgattgacgtagattt--tcctcttagttggatttcag-----------------------------------------------