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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACACGCACTGgtatacttcctgaaatttacatttttgttttgtttttgttagtgtgtctgaatcagaatatttgttacaatttgtttcccttacttttgttctctctaac...

Basic information

species Glycine max
transcript GLYMA02G00760.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G00760.1 (Glycine max), 5'ss of exon 4
lower sequence: AT4G14740.3 (Arabidopsis thaliana), 5'ss of exon 2
AGCTTCAGTGGTGAAATTGTACCAGAAGAAAATTTCTTGGGGATTTGTAGCAGAGAATTGCTAGCCAGAGGTTGTGAACTTCTCAAGCGCACACGCACTGgtat-acttcctgaaatttacatttttgttttgtttttgttagtgtgtctgaatcagaatatttgttacaatttgtttcccttacttttgttctctctaac
||   |||||||||| |||||| | | || ||||||||||| | |||||| ||||||| ||| || |||||||||||||| ||||| ||||| ||||  ||||  |     | ||| ||   | |||     ||||   ||   ||   ||||||    | | | | |  || |||  |  || |                
AGTCACAGTGGTGAACTTGTACAACAGGAGAATTTCTTGGGAACTTGTAGTAGAGAATGGCTCGCTAGAGGTTGTGAACTCCTCAAACGCACTCGCAAAGgtaagaaaaattcaaacttgtgtatttaaaa-gtttaaattttagttgttgaatct---tttgtctaatgatgtgtgacttttgcag--------------