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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGAACCCGGCACTCGCCCTCCTCTTTGCCAGTCTGATGATGACCCAGATGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacctttttctcacgtggtattgaaaatatgtgatggtttttgcactttatttctatgccttgtatatttctagttatttcttttttactagcaa...

Basic information

species Glycine max
transcript GLYMA02G00550.1
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208059054|gb|GD856132.1|GD856132
EST:     TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGNTTGA
genomic: TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacct ... atcttatcagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|10237545|gb|BE806433.1|BE806433
EST:     AGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: AGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacct ... atcttatcagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|14011318|gb|BG726249.1|BG726249
EST:     TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacct ... atcttatcagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
EST: gi|20811343|gb|BQ295821.1|BQ295821
EST:     TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACC                         ATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA
genomic: TGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacct ... atcttatcagATGACAACAGAGCCAAGGGTAGTGGATTAGCTCCATGGCCTGCAAGATTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGAACCCGGCACTCGCCCTCCTCTTTGCCAGTCTGATGATGACCCAGATGCAGTTTTTGGAGTGAATATGGAAGCCTGCATAACACCTTACTCTGACCgtgagtacctttttctcacgtggtattgaaaatatgtgatggtttttgcactttatttctatgccttgtatatttctagttatttcttttttactagcaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG