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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTATAACCCGTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatctcatccaacaagctgtgactatatgttaagtcagttacctacttgatcaccttttgtgctataaaatgaatattttcatatattgattga...

Basic information

species Glycine max
transcript GLYMA01G44560.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G44560.1 (Glycine max), 5'ss of exon 4
lower sequence: Vv05s0020g03760.t01 (Vitis vinifera), 5'ss of exon 5
CTGTCTTGGCTTTTTGAGCAATTATAGAAGGTTTAATGTGGCTATAACCCGTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatctcatccaacaagctgtgactatatgttaagtcagttacctacttgatcaccttt-tgtgctataaaatgaatattttcatatattgattga
|||| | || ||||||||||||   |||||||||||||||||||| ||||| |||| ||| |||||  |||| ||||| || || || |||||| |||||||||  |   || |  |  |         |  | |    ||| || |  | |   || |  |   ||   |    |||||   |  | ||  ||  ||  |
CTGTTTGGGATTTTTGAGCAATCCCAGAAGGTTTAATGTGGCTATTACCCGAGCTAAATCGTTGCTTATTATTATTGGAAATCCACACATTATCAGCAAGgtatctctcatcctttatgagctccccttttcaaggatggtctgt-atattcaaaataaaatccatgcaatgcttaatgatgttgataatgaatgcatgca
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14011436|gb|BG726358.1|BG726358
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|209697278|gb|BW655507.1|BW655507
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|51335669|gb|CO979535.1|CO979535
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|209727301|gb|BW663220.1|BW663220
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|21600636|gb|BQ610967.1|BQ610967
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|22933830|gb|BU550969.1|BU550969
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|193531120|gb|FK486241.1|FK486241
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         GACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT
EST: gi|151399531|gb|EV269402.1|EV269402
EST:     GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAG                         -ACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAAT-CATCTTAT
genomic: GTGCTATATCATTGCTGGTTATAATTGGGAACCCGCATATTATCTGCAAGgtattgcatc ... catttggcagGACGACCATTGGAGCCAAATGTTGTGGCACTGTGTGGACAATTCATCTTAT