1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGGTTGGCTTCACACCGGTGATGTTGGCTACGTAGATGATGATGACGAAATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaataggcatttaaatttgcctcacatatatagttttatagagagaaaacaatgtgacaagaattaattaattatatttattcttttgttgtgctag
species | Glycine max |
transcript | GLYMA01G44270.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|9259917|gb|BE348064.1|BE348064
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|13480316|gb|BG509659.1|BG509659
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|16105118|gb|BI892858.1|BI892858
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCTTTACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|26059548|gb|CA802462.1|CA802462
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTATTTCTTTTCTCCATTGCAEST: gi|192314592|gb|FK008128.1|FK008128
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|17400953|gb|BM177735.1|BM177735
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|7588277|gb|AW704076.1|AW704076
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|192314591|gb|FK008127.1|FK008127
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCAEST: gi|23732670|gb|BU764504.1|BU764504
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
EST: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAG GTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
genomic: TTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaat ... gttgtgctagGTGCCCCCTGCAGAACTTGAAGGGCTTCTTGTAAGCCATCCCTCCATTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGGCTTCACACCGGTGATGTTGGCTACGTAGATGATGATGACGAAATTTTCATTGTTGACAGGGTGAAGGAACTCATCAAATATAAAGGCTTCCAGgtatattaataggcatttaaatttgcctcacatatatagttttatagagagaaaacaatgtgacaagaattaattaattatatttattcttttgttgtgctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA