Sequence
atgc intronic sequence ATGC exonic sequenceGTAAGATGGAGTTCTGTTATGGACAGGTCTTTACCTGAGCCACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGGgtgcgtgctactgtgtacatgttgtttttcacaagccttttgtgatatgaaacttatgcgtggcatgaattgtttctgtacaatgtgcatgattatcacg...
Basic information
species | Glycine max |
transcript | GLYMA01G44190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA01G44190.1 (Glycine max), 5'ss of exon 4
lower sequence: LOC_Os01g66240.1 (Oryza sativa), 5'ss of exon 4
GTAAGATGGAGTTCTGTTATGGACAGGTCTTTACCTGAGCCACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGGgtgcgtgctac-tgtgtacatgttgtttttcaca---agccttttgtgatatgaaacttatgcgtggcatgaattgtttctgtacaatgtgcatg-attatcacg-----------------------------------------------------------
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GTGCAATGGAACTCATTTATGGACAAATCAGTACCTGATCCACCAACAGCTGTTCTCCTTCATGGCATCCTTGGGAGCAGGAAAAACTGGGgtaattgagaagtgcttgctt-tcctattgcatactttgtttcctggtgtattgggtttgttgttgtgttcagtttgcagagtgaaatactgacacattttaaagctgttttggctgtataaatgcatttaatcacaaaattaattaactgtgttgatttgaag
upper sequence: GLYMA01G44190.1 (Glycine max), 5'ss of exon 4
lower sequence: GRMZM2G007160_T02 (Zea mays), 5'ss of exon 4
GTAAGATGGAGTTCTGTTATGGACAGGTCTTTACCTGAGCCACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGGgtgcgtg------ctactgtgtacatgttgtttttcacaagccttttgtgatatgaaacttatgcgtggcat-gaattgtttctgtacaatgtgcatgattatcacg-------------------------------------------------------
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GTTCAGTGGAATTCATTTATGGACAAATCAATACCTGATCCACCAACAGCTGTTCTTCTTCATGGCATCCTTGGGAGCAGGAAAAACTGGGgtaaatgaggagtcctcaatgtgtctgtaatttgtcttaatatttgtattggcccattttgtattttgttataggtttgaagttgagtaacatacttgatttttttatattttggttgtgaaccacatgactaacaaagtaacaaacaaattgtctgtgaagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|209724842|gb|BW672625.1|BW672625EST: ACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGG GAACTTTTGCTAGGAGATTGGCTCAAGAGTTTCCTACATGGCAG
genomic: ACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGGgtgcgtgcta ... gatattgcagGAACTTTTGCTAGGAGATTGGCTCAAGAGTTTCCTACATGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTAAGATGGAGTTCTGTTATGGACAGGTCTTTACCTGAGCCACCAACGGCTGTTTTTCTGCATGGAATCCTAGGTTGCAGGAAAAACTGGGgtgcgtgctactgtgtacatgttgtttttcacaagccttttgtgatatgaaacttatgcgtggcatgaattgtttctgtacaatgtgcatgattatcacg
- - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA